Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211577g00008 ATGCCTGAACTCACTAATAACGGCCGTGACAGCTCCTCTGTCACAGTCAAGTTCACCAAGCTATTCATCAATGGAGACTTTCTTGATTCAGTTTCAGGGAAGACGTTTGAGACAATAGATCCAAGAACAGGAGAAGTGATAACAAGAATTAGTGAAGGAACCAAAGAAGACATAGATATTGCTGTTAAAGCTGCACGTCACGCATTTGACTTTGGTCCATGGCCTCGCTTGCCTCCTTCTGAGAGAGCAAAGATGATGATGAAATGGGCAGAACTAATCGACGAAAACTCAGAAGAAGTTGCAGCACTAGATGCCATTGATGCTGGAAAATTGTATCATATGTGCAAGGCTGTGGACATTCCTACAGCATCAAACACTCTACGCTACTATGCTGGTGCTGCTGACAAAATTCATGGTGAAGTGTTAAAGATGTCTGGGCAGTTTCATGCATACACATTGATGGAACCAATTGGTGTTGTTGGACACATCATTCCATGGAATTTCCCAACCACCATGTTCTTCCTTAAAGTTAGCCCTTCCTTGGCTGCAGGCTGCACCATGATCCTCAAGCCTGCAGAGCAAACACCACTCTCTGCTTTGTTTTATGCTCATCTAGCCAAACTGGCTGGAGTCCCTGATGGAGTGATTAATGTTGTGCCCGGATTCGGCCCAACTGCTGGTGCTGCAATAAGCTCACACATGGATATTGACAAGGTTAGCTTCACTGCTACTGACCTTGCTCTCTTGGGCATCCTATTTAACAAGGGAGAAGTCTGTGTTGCAAGTTCGCGTGTGTTTGTTCAGGAAGGGATCTACGAGGAGTTCGAGAAGAAATTGGTAGAGAAGGCAAAAGCATGGGTTGTTGGGGATCCTTTTGACCCTAAATCTCAGCAAGGACCTCAGGTTGACAAGAACCAATTTGAAAAAGTCCTTTCCTACATTGAGCATGGAAAGAGACAAGGAGCTACCCTGTTAACTGGGGGCAAAACACTGGGAAACAAGGGCTATTACATTCAACCAACAATTTTTTCTAATGTGAAGGAGGATATGCTTATAGCACAAGATGAAATATTCGGCCCTGTCATGGCACTCAAGAAGTTCAAGACGATTGAGGAAGCAATTAAGAGCGCAAACAGCACAAGATATGGGTTAGCAGCAGGGGTAGTGACGAAGAACATAGACACAGCAAACACAATGTCAAGGTCCATTCGAGCAGGCACAATCTGGATCAATTGCTACTTTGCATTTGGGGATGATGTCCCTTTTGGAGGGTATAAGATGAGTGGATTCGGAAAAGATTCTGGATTGGATGCACTTTTCAAGTACTTACAAGTTAAATCTGTTGTCACACCTATTTACAATTCTCCTTGGCTTTGA 1377 0.4408 MPELTNNGRDSSSVTVKFTKLFINGDFLDSVSGKTFETIDPRTGEVITRISEGTKEDIDIAVKAARHAFDFGPWPRLPPSERAKMMMKWAELIDENSEEVAALDAIDAGKLYHMCKAVDIPTASNTLRYYAGAADKIHGEVLKMSGQFHAYTLMEPIGVVGHIIPWNFPTTMFFLKVSPSLAAGCTMILKPAEQTPLSALFYAHLAKLAGVPDGVINVVPGFGPTAGAAISSHMDIDKVSFTATDLALLGILFNKGEVCVASSRVFVQEGIYEEFEKKLVEKAKAWVVGDPFDPKSQQGPQVDKNQFEKVLSYIEHGKRQGATLLTGGKTLGNKGYYIQPTIFSNVKEDMLIAQDEIFGPVMALKKFKTIEEAIKSANSTRYGLAAGVVTKNIDTANTMSRSIRAGTIWINCYFAFGDDVPFGGYKMSGFGKDSGLDALFKYLQVKSVVTPIYNSPWL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211577g00008 458 SUPERFAMILY ALDH-like 14 454 IPR016161 GO:0016491
Stsc211577g00008 458 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 252 263 IPR016160 GO:0016491
Stsc211577g00008 458 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 420 448 IPR016162 GO:0016491
Stsc211577g00008 458 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 9 244 IPR016162 GO:0016491
Stsc211577g00008 458 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 23 250 - -
Stsc211577g00008 458 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 14 243 - -
Stsc211577g00008 458 FunFam Aldehyde dehydrogenase3 228 417 - -
Stsc211577g00008 458 FunFam Aldehyde dehydrogenase, putative 420 446 - -
Stsc211577g00008 458 Pfam Aldehyde dehydrogenase family 244 448 IPR015590 GO:0016491
Stsc211577g00008 458 Pfam Aldehyde dehydrogenase family 30 243 IPR015590 GO:0016491
Stsc211577g00008 458 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 245 419 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211577g00008 Stsc-Chr211577 42753 46610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211577g00008 7 458 Aldehyde Dehydrogenase Gene Family AT3G24503 62.725 0.0 646