Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211576g00009 ATGATGAAGAACACCATGTCTTCTCTTACTCATAAACTCTCTCTTCTTCTTTCATTTCTGGCATCATCTTCATTTGTTCTTACTACAACCACAGCTACTGTGTTGTCATCGAAAGTTTCAATCAAAGATACAATTTTGGAGCCTTTCAAGTGCTCCACAACCATAAAAACATGCAATGCCTCACTCTACCACATAACCTATGATGATCATGATGTTAATAACATATCTTCCAATTACACAAACTCCTCAGAAATAAGACCAATCACACGTGGCAAGAGACAAGACCACCTCATAACAGTGCCTTGTTCATGCAGAAACAACAACCTCACTGGTTATTACTATGACACAACCTACACAGTGAAGCCCAATGATGATTTCTATGACATTAATAACTTTGTTTACAGTGGTCAAGCCGTGCATATTGATGGTGTTCTTCACCCGGGTCAGAATCTGAGTATTCATATTCCATGTGGGTGTTCATCATCAGAGATTGAGTCAGAAATTGTTGTGACTTACACGGTTCAAAGGAATGATACCACTTATGGAATAGCTATGCTTTTGAATTCTACGGTTTCTGAGATTGAGAGTGTGAATCATGTTTTGGTTCAGAACCCATCATATATAGAACCGGGTTGGGTTTTGTTTGTTCCTAGCCAATCTAATGGAATTCCACTGCATCCAACAAAAGAAAAGAAACCAAAGTGGCAGATAATCATTGGCGTCTTAGCAGCTGTGACATTACTTTCAATGATTGCTGTCATCTTTCTCATTATCAGGAGAAGTAGATCTAAGGCAGCATTCGCCATTGATAATCCAAATAGTGCCTCTAAAAGATCCATTTCCAAAAAGAACTCTGACATTCATAATAAAGATTACATACAAGATGCAACATCATTTGATTCAGAAAGACCAGTAATTTACTCTATTGAGGAGATAGAAGCTGCTACAAATAACTTTGATGAAAACAGAAGAATTGGAGTTGGTGGGTATGGCAGTGTATATTTTGGAATGTTAGACCACAAGGAGGTTGCTGTAAAGAAGATGAAGTCCAATAAATCCAAAGAATTCTTTGCAGAACTGAAGGCCTTATGTAAAATCCATCACATAAACATTGTGGAGTTGTTGGGATATGCAAGTGGAGATGACCACCTTTATTTGGTGTATGAGTATGTTGCAAATGGATCTCTCAGTGATCATCTTCATGATCCTTTACTCAAAGGTCATCAGGTTCTATCATGGTGTGCTAGGACTCAGATTGCACTGGATGCAGCAAAAGGAATTGAATACATACATGATTACACAAAAGCACAATATGTCCACCGTGATATCAAGACTACTAACATTCTTCTTGATCAGAAACTCAGAGCCAAGGTAGCAGATTTTGGGCTTGCAAAGTTGGTGGAAAGGACCAATGATGAAGAATTCATTGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCGGTGAAAGAGTTACAAGTGACCACAAAAACTGATGTGTTTGCATTTGGAGTAGTTCTGTCAGAGCTCATAACAGGAAAACGTGCGCTATTTCGTGACACCCAACAACCCAACCACACCCAATCTCTTATTTCACTTGTCAAGAAAATATTCCAAGATAGTGACCCCTTAACTGCTTTAGAGAATGTGACAGATGTGAATCTTCAACATAACTATCCCATGGACGCTATGTATAAGATGGCAGAAGTAGCAGAGAGGTGCTTGAGGGAGGAAGCAATGGAGAGGCCTGAAATGAAGGAGATGGTGGGGGCGCTGTCACAGATAGTTATGAGTTCCATAGAGTGGGAAGCATCACTCGGAGGAGATAGCCAAGTTTTCAGCGGCGTTTTTATTGGAAGATAA 1872 0.3969 MMKNTMSSLTHKLSLLLSFLASSSFVLTTTTATVLSSKVSIKDTILEPFKCSTTIKTCNASLYHITYDDHDVNNISSNYTNSSEIRPITRGKRQDHLITVPCSCRNNNLTGYYYDTTYTVKPNDDFYDINNFVYSGQAVHIDGVLHPGQNLSIHIPCGCSSSEIESEIVVTYTVQRNDTTYGIAMLLNSTVSEIESVNHVLVQNPSYIEPGWVLFVPSQSNGIPLHPTKEKKPKWQIIIGVLAAVTLLSMIAVIFLIIRRSRSKAAFAIDNPNSASKRSISKKNSDIHNKDYIQDATSFDSERPVIYSIEEIEAATNNFDENRRIGVGGYGSVYFGMLDHKEVAVKKMKSNKSKEFFAELKALCKIHHINIVELLGYASGDDHLYLVYEYVANGSLSDHLHDPLLKGHQVLSWCARTQIALDAAKGIEYIHDYTKAQYVHRDIKTTNILLDQKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESVKELQVTTKTDVFAFGVVLSELITGKRALFRDTQQPNHTQSLISLVKKIFQDSDPLTALENVTDVNLQHNYPMDAMYKMAEVAERCLREEAMERPEMKEMVGALSQIVMSSIEWEASLGGDSQVFSGVFIGR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211576g00009 623 Gene3D Phosphorylase Kinase; domain 1 297 390 - -
Stsc211576g00009 623 ProSiteProfiles Protein kinase domain profile. 319 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211576g00009 623 PIRSF TyrPK_CSF1-R 557 612 - -
Stsc211576g00009 623 PIRSF TyrPK_CSF1-R 218 264 - -
Stsc211576g00009 623 PIRSF TyrPK_CSF1-R 2 133 - -
Stsc211576g00009 623 PIRSF TyrPK_CSF1-R 417 518 - -
Stsc211576g00009 623 PIRSF TyrPK_CSF1-R 323 412 - -
Stsc211576g00009 623 SMART LysM_2 171 217 IPR018392 -
Stsc211576g00009 623 FunFam Kinase family protein 294 390 - -
Stsc211576g00009 623 CDD LysM 170 216 IPR018392 -
Stsc211576g00009 623 SMART serkin_6 319 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211576g00009 623 FunFam PTI1-like tyrosine-protein kinase 3 391 609 - -
Stsc211576g00009 623 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Stsc211576g00009 623 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 33 619 IPR044812 GO:0019199|GO:0045087
Stsc211576g00009 623 SUPERFAMILY LysM domain 170 217 IPR036779 -
Stsc211576g00009 623 Pfam Protein kinase domain 320 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211576g00009 623 Pfam LysM domain 172 217 IPR018392 -
Stsc211576g00009 623 ProSiteProfiles LysM domain profile. 170 216 IPR018392 -
Stsc211576g00009 623 SUPERFAMILY Protein kinase-like (PK-like) 303 595 IPR011009 -
Stsc211576g00009 623 Gene3D Transferase(Phosphotransferase) domain 1 391 608 - -
Stsc211576g00009 623 Gene3D LysM domain 164 222 IPR036779 -
Stsc211576g00009 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211576g00009 Stsc-Chr211576 61550 64740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211576g00009 299 623 Receptor kinase-like Gene Family AT1G51940 51.964 5.57e-116 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc211576g00009 Pkinase 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211576g00009 - - gmx:100800907 789.645