Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211575g00007 ATGGAGGAAGCACCCAGGCCCCTCAACGCCCTGTCGGAGATTCTCGAACCCGAGAAACACCGCAGCAAGAAATGCTCCTCCGCCACCACCTCCACTAAGCGGACCCTTCAAAAGAAACGCCCGAGATACAGGGGTGTGAGGCGGAGGCCAGGGGGCCGTTATGCCGCAGAGATAAGTGACCCTCAATCTAAGGAGCGCCGTTCTTTGGGGACGTTCGACACGGCGGAGGAAGCCGCCCGCGCCTACGACAGCGCCGCCAGAGCCATCCGCGGGCTCAAGGCGACAACCAACTTTGTGTACCCTACTTCCCCTCCTCACCCTTCTCCCGTCACCAACAAAAACCTTCTTAACCGCTGTAACCACCTCTTCGCGCGCCAGTTCAGCTTCCACAACAAGTATCATAACCAACTCAGTAACCGCCACTCGGGTGGTTGTTGGCCTGACCCCTACTCCTCCTCTTCTTCCTTTCCAACCTTCCAACAGCAGTTTAACTCCATCAACACGCTACTCCTCCGTGACTTGATAGCCTCTTCTTCTTCTTACACCAACCCTTCTCTTTCATCTTCCTTGAGCCACCATTTATCCTTCCCCAAGGGCAGTTTAGTCAACTCATCATCACACGGTGGCAATGTTACTAATAATAACTACACCTCACCCTTTTATGAAGCCAATGGCGGTGAATGCTCGCAAGAGTTCTTTCAACATTCGGACTCATCATCATCGGGGTTGTTGCAAGAGATAGTTAGCGGTATCTCGAAAAGTCCGAAGCAGTGTTCGTTGTTAGACTCTCCTATTATTTCTGCATCACAAGGTTCTTGCCACCATCACACTCACTCATTTTCTCCTCCTCCTCCTATTCCAGCTGTTTCCAGCCGTGAGACGATGAAGAAAGACGACGGTTTTAATGTTCCTTTGTATCAAGATGTGCTGCAGGGTGGTGCAGTGAGTGGGTCAGGGCAGTGCCGCTGGCATGGGGGCAGCACTGGGCCATTTCTGGTGCCTCATGGTGTGGGTGCGGCACTGGATCAACATGAGGCCGCGGCACTGGTTCATGTGAAACCTTATATAACTAGGGTTGGGCACCTCTCATCCTCATTTCAAATACTCAACACTCAACCACACTCTCTCCCTTGTTCTTCTTCCCCCAACATTTTTGTTATGGATCAACCTCAACCTTTGGTAATACGGCTGCACCCGAATGCGGTCGTTCATGAGCGACAGGACAGAGTCTGGTTCCAATCCGACTCATCGGTGGTGTTCCAACATGTCGATATAAGCACCATGTCGGTGTTAGAAGCAATCTTCTTGTACCACCTAGGAGGCGGATTCACGGAGATTAGAAAAGTCGGGTACCGCTACTTGCAGCGACAGCCTAATAGAAGGTTCGTACATCTGTTGGTGTGGTTATTTAATGATGAGCACGTCCGCGTCACTTTCGGATGCCACTGCAGACTGATGCCGCAACACGTCATGGATTTTTTGGTTGAGGTCAGCCGCATCCCAGCTGGCCTGCCGGTTGCGGCGACACCGGTCCGAATAGCTGAATCCCCCACTCCGGAAACAGAAGCGGCGATGGGTCATTCAGAGTCAGAGGAGGATGATTCGGACTATGCTACGAGCACTGCATCATCCTCTGATGCTCAGGAAGGTGGTGAGGGCGGTGCGGAAACCCGGTCAGTTAGCTGCCCTCGTTATATACTTCCGGCACTGCCGCCAATTCCAAGGAAGGATGACGTGCCATGCTTTTTCCAATAG 1755 0.5248 MEEAPRPLNALSEILEPEKHRSKKCSSATTSTKRTLQKKRPRYRGVRRRPGGRYAAEISDPQSKERRSLGTFDTAEEAARAYDSAARAIRGLKATTNFVYPTSPPHPSPVTNKNLLNRCNHLFARQFSFHNKYHNQLSNRHSGGCWPDPYSSSSSFPTFQQQFNSINTLLLRDLIASSSSYTNPSLSSSLSHHLSFPKGSLVNSSSHGGNVTNNNYTSPFYEANGGECSQEFFQHSDSSSSGLLQEIVSGISKSPKQCSLLDSPIISASQGSCHHHTHSFSPPPPIPAVSSRETMKKDDGFNVPLYQDVLQGGAVSGSGQCRWHGGSTGPFLVPHGVGAALDQHEAAALVHVKPYITRVGHLSSSFQILNTQPHSLPCSSSPNIFVMDQPQPLVIRLHPNAVVHERQDRVWFQSDSSVVFQHVDISTMSVLEAIFLYHLGGGFTEIRKVGYRYLQRQPNRRFVHLLVWLFNDEHVRVTFGCHCRLMPQHVMDFLVEVSRIPAGLPVAATPVRIAESPTPETEAAMGHSESEEDDSDYATSTASSSDAQEGGEGGAETRSVSCPRYILPALPPIPRKDDVPCFFQ 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211575g00007 584 MobiDBLite consensus disorder prediction 1 69 - -
Stsc211575g00007 584 MobiDBLite consensus disorder prediction 272 292 - -
Stsc211575g00007 584 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Stsc211575g00007 584 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Stsc211575g00007 584 MobiDBLite consensus disorder prediction 50 69 - -
Stsc211575g00007 584 MobiDBLite consensus disorder prediction 511 559 - -
Stsc211575g00007 584 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Stsc211575g00007 584 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Stsc211575g00007 584 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Stsc211575g00007 584 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Stsc211575g00007 584 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 224 - -
Stsc211575g00007 584 MobiDBLite consensus disorder prediction 35 49 - -
Stsc211575g00007 584 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Stsc211575g00007 584 CDD AP2 55 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211575g00007 Stsc-Chr211575 45913 48254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211575g00007 21 248 AP2-EREBP Transcription Factor Family AT1G12980 40.928 6.90e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211575g00007 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211575g00007 - - aip:107641557 200.29