Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211573g00019 ATGGATTGCATCAGAATTCAAAATACCTTGTCTCATAGCAGGAAGAATTGGAAATATGATGTGTTTGTGAGTTCTAGAGGCGAGACTCGCTACAACTTCACCGATCATCTTTTTGCTGCTCTCCGTAGACATGGAATACTTGCCTTCAGGGATGATACTAAGCTCCAGAAAGGAGGACTTATATCAGCAGCTCTTCTGGAAGCTATTGAAGGATCACAGGTTCTGATTGTGGTCTTCTCTATGAACTATGCTTCTTCAACATGGTGTTTGCAAGAACTCGCAAAGATAACTGATTGCATTCAAATTCCTGGACACCATGTTCTGCCTGTTTTCTATGATGTGAGTCCATCTGAGGTCAGAAAGCAAAGTGGAAACTATGAAGCAGCCTTTACGGAACATGAAGAAAGATTCAAAGATGATGCAGAGATGATGGAGCAAGTGCGAAGATGGAGGGCAGCTCTAACACAAGTAGCCAATCTCTCTGGCTGGGATGTCAAGGATAAGTCACAATCTGCTGAGATTGAAAAAATTGTAAAAGTGGTAACAGAAAACCTGAGTCCCAAGCCATCCTCAAGTCTATCTAATGATATAGTTGGGATGCATTCCCGTTTAGAAAAACTAGAAAAGCTTCTAGTTTTGGACTCAGAAGATGATGTTCGAGTTGTAGGGATTTGTGGAATGGGTGGCATAGGAAAGTCAACTCTCGCCACTATTTTATATGAAAAATTCTCTCATCAATTCGATGTTTCATGTTTTGTGGATGATATAAGTAAAACTTACAGAGATTGTGGTCCACTTGGTGTGCAAAAGCAGCTTCTTTGTCAAGCTTTCATGGGAGAAGATTTTCTAATATGCAATCATTCGATGGCAACTAATTTGATTCAAAATAGGTTACGCTATAGAAAGGTTCTCATAGTTTTGGATAATGTTGATCATGGGATTCAATTGGAGAAGTTGGCTTTAAGGCGGGAATGGTTAGGTAATGGGAGTAGAATAATCATAGTTTCTAGAGATGAACATATATTGAGAGAGTTTGAAGTTGATGATGTTTACAGAGTTCAACTCTTAAATGATGAGAATTCTCTCCAATTGTTTTGTAGAAAAGCTTTCAAAAGTAATCATGTTGCAAAAGATTATGAAAGCCTGACAAATTCTACATTAACCTATGCTAAGGGACTTCCGTTAGCAATTAGAGTATTGGGCTCCTTTTTGTATGGGCGAGATGTCTCTGAGTGGAGTAGTGCACTGGTTAGACTGAAAGAATATCCAACAAAAGATGTCATGGATGTGCTGCGAATTAGTTTTGATGCACTTGAGGATATGGAGAAGGAAATATTTCTTGATATTGCCTGTTTCTTTCCTCACGAAACTGAAAACTATGTGAAAGAGATTTTAAGTATTCGAGGATTCCATCCTAATATTGGTATAAGAGTTCTCATTGATAAATCACTCATAACTCGTGATCAGTGGACGATCAAAATGCATGATCTGTTGAGAGACTTGGGTAGAAGTATTGTTAGAGAAAAATCACCTAAAGAACCAAGAAAGTGGAGCAGGATATGGAATCACAAGGATCTAAGCCATGTCTTGAGGGAAAATGAGACAGCAGAGAACCTTGAAGCTATTGTCCTGCCAAAATTTGATGAAATAAAGGAAGAGGTGTCAGTTGAAGCTCTATCAAAAATGAGGCGCCTGAATTTACTCATACTTAATGGCAAAGTGAATTTCTCAGGATGCCTTGATTTTCTTTCTAATGAGTTGAGATTTCTTGAATGGAAAAAATATCCCTTCACATGTTTGCCATCCAGCTTTCAACCAAATAATCTCCATAAATTAATCCTACGTCATAGCAACCTCAAAGAGCTCTGGGAAGGAATAAAGGATCTACATAATTTGACACATATGGAACTATGTTATTCCAAAAGTCTGGTAAGGATACCAAACTTATCTCAGGCACCAAAGCTTTCGCGCCTGAATCTTAAAGGATGTGTTAAACTTGTTCAACTTGATGCATCCATTGGTGCTCTGAAAAAGCTTTATTTCTTGAATCTGGAAAACTGCAAAAGTCTTGTTAGCATTCCCAATAGCATATTTAATCTTGACTCTCTTCGTGTTTTAAATCTATCTGGTTGTTCGAAACTAATTGAATATCAGTTGTTTGAGAGACCAAGACAAAGCGAGCCTTCGACTGCATGTCAAAGTGTACAAACCCATATGACATCCTCCATATGTAAAACTCTTGCAAGGCCTCTCCATTTTCTCTCTTCTTCTAGAAGTAGTCCCAATTCAGCTGGTTTGTTGTTGTTGCTGCCTTCTTCTTTGCCTCGTTTCCCAGCTTTGAGAGATCTTGACATAAGTTTCTGTAATCTAGTTCAAATTCCTGATGTTATTGGACAGTTAGGTAGTTTAGAAAGATTAAACTTAGGGGGAAACAATATTGTTACACTACCTCATTGCATCAAGGAACTTCCCAAGCTAAGGCAGTTGAACTTGCAGTACTGTAAGCATCTAAAGTGGTTGCCAAGTAACCTCTTGCCCATGGGAGGTACCAGTGGAAGAGTTAAATATGGAGGAACATATTGTGGATTATATGTTTTCAACTGCCCCAATTTGAGTGACCTGGAAGGTTGTCGTCTCACAGTTAGTTCATGGATGATCAAAATGATTCAGGTGAACATGCAATCTTCTCTACCCAGATGCATCATCAGTGTTGTTATTCCAGGAAGTGAAATTCCAAGGTGGTTCGACAAACAGAATACTGGTAGTTCAATGAAGCTAGATCCATCTCCCATTCTGGATGACAATAATGGGCTTATTGGCATTTCTTGCTGTGTAACATTTGTTGTACATGCTGTTCCAATTCAAATGCCTGAAGAACAGAAACATACTGGTGATATTATTTCTTTTGGTTTTCTTGTTAATCGGACCGACGGAAGTTTTTTCACAGTTCCAATACATCTTAAGAAAGATTTGATCACAATTGAATTAGATCATATGTTCCTAGTATTTTTCTCCCGGGACAGGCTCATTGATGATTATACCAGTCATTTGAAAGAAGGGGTATGTGATCTTGATGGTATTGAACTGGCCTACAACAATGTTTATTCGGAAGAAATAATACAAGTGAAGAGTTGTGGTTACCAATGGGTATTTAAGGAAGATTTGGAACAACTAAACCCAACAATGATGTTTAGCACAAGTTCTTCATCTCAGAATCAGAAGCACAAGTTTTTGGCAATTGAAGATCATCAATAG 3255 0.3825 MDCIRIQNTLSHSRKNWKYDVFVSSRGETRYNFTDHLFAALRRHGILAFRDDTKLQKGGLISAALLEAIEGSQVLIVVFSMNYASSTWCLQELAKITDCIQIPGHHVLPVFYDVSPSEVRKQSGNYEAAFTEHEERFKDDAEMMEQVRRWRAALTQVANLSGWDVKDKSQSAEIEKIVKVVTENLSPKPSSSLSNDIVGMHSRLEKLEKLLVLDSEDDVRVVGICGMGGIGKSTLATILYEKFSHQFDVSCFVDDISKTYRDCGPLGVQKQLLCQAFMGEDFLICNHSMATNLIQNRLRYRKVLIVLDNVDHGIQLEKLALRREWLGNGSRIIIVSRDEHILREFEVDDVYRVQLLNDENSLQLFCRKAFKSNHVAKDYESLTNSTLTYAKGLPLAIRVLGSFLYGRDVSEWSSALVRLKEYPTKDVMDVLRISFDALEDMEKEIFLDIACFFPHETENYVKEILSIRGFHPNIGIRVLIDKSLITRDQWTIKMHDLLRDLGRSIVREKSPKEPRKWSRIWNHKDLSHVLRENETAENLEAIVLPKFDEIKEEVSVEALSKMRRLNLLILNGKVNFSGCLDFLSNELRFLEWKKYPFTCLPSSFQPNNLHKLILRHSNLKELWEGIKDLHNLTHMELCYSKSLVRIPNLSQAPKLSRLNLKGCVKLVQLDASIGALKKLYFLNLENCKSLVSIPNSIFNLDSLRVLNLSGCSKLIEYQLFERPRQSEPSTACQSVQTHMTSSICKTLARPLHFLSSSRSSPNSAGLLLLLPSSLPRFPALRDLDISFCNLVQIPDVIGQLGSLERLNLGGNNIVTLPHCIKELPKLRQLNLQYCKHLKWLPSNLLPMGGTSGRVKYGGTYCGLYVFNCPNLSDLEGCRLTVSSWMIKMIQVNMQSSLPRCIISVVIPGSEIPRWFDKQNTGSSMKLDPSPILDDNNGLIGISCCVTFVVHAVPIQMPEEQKHTGDIISFGFLVNRTDGSFFTVPIHLKKDLITIELDHMFLVFFSRDRLIDDYTSHLKEGVCDLDGIELAYNNVYSEEIIQVKSCGYQWVFKEDLEQLNPTMMFSTSSSSQNQKHKFLAIEDHQ 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211573g00019 1084 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 715 IPR044974 GO:0006952
Stsc211573g00019 1084 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 163 IPR035897 -
Stsc211573g00019 1084 Gene3D - 185 351 IPR027417 -
Stsc211573g00019 1084 SUPERFAMILY L domain-like 493 844 - -
Stsc211573g00019 1084 ProSiteProfiles Leucine-rich repeat profile. 802 823 IPR001611 GO:0005515
Stsc211573g00019 1084 Pfam Leucine Rich Repeat 608 627 IPR011713 -
Stsc211573g00019 1084 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 187 - -
Stsc211573g00019 1084 Coils Coil 1080 1084 - -
Stsc211573g00019 1084 Pfam TIR domain 18 196 IPR000157 GO:0007165
Stsc211573g00019 1084 PRINTS Disease resistance protein signature 698 714 - -
Stsc211573g00019 1084 PRINTS Disease resistance protein signature 390 404 - -
Stsc211573g00019 1084 PRINTS Disease resistance protein signature 297 311 - -
Stsc211573g00019 1084 PRINTS Disease resistance protein signature 221 236 - -
Stsc211573g00019 1084 Gene3D - 11 184 IPR035897 -
Stsc211573g00019 1084 Gene3D Ribonuclease Inhibitor 512 725 IPR032675 -
Stsc211573g00019 1084 Gene3D Ribonuclease Inhibitor 726 901 IPR032675 -
Stsc211573g00019 1084 ProSiteProfiles TIR domain profile. 17 185 IPR000157 GO:0007165
Stsc211573g00019 1084 Gene3D - 355 439 IPR042197 -
Stsc211573g00019 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 449 IPR027417 -
Stsc211573g00019 1084 Pfam Leucine rich repeat 778 834 IPR001611 GO:0005515
Stsc211573g00019 1084 Pfam C-JID domain 906 1056 IPR045344 -
Stsc211573g00019 1084 SMART till_3 18 160 IPR000157 GO:0007165
Stsc211573g00019 1084 Pfam NB-ARC domain 204 425 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211573g00019 Stsc-Chr211573 94853 98695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211573g00019 19 829 WRKY Transcription Factor Family AT4G12020 30.964 3.07e-89 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211573g00019 - - adu:107476580 1289.63