Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211573g00014 ATGGCTTCACTATATGAAGTGCTTGGGATTTCAATGGGAGCAAGCTGCCATGAAATAAAAGCTGCATACAGAAAGCTAGCAAGAACATGCCACCCTGATGTTGTGGCCATGAATCAGAAGGAAAGCTCGGCCAACATGTTCATGAAGATCCATTCAGCTTATTCAACACTTTCAGACCCAGATAAGAGAGCTAAGTATGATAGAGAAACCTATGGACACATGGTCATGATGAGATCTTCATCAAACATGGCTGCTTCAGCTTCATATCAATCATTTTGTCAACAAGGGAGGAAATGGGAAACAGATCAATGTTGGTAG 318 0.4182 MASLYEVLGISMGASCHEIKAAYRKLARTCHPDVVAMNQKESSANMFMKIHSAYSTLSDPDKRAKYDRETYGHMVMMRSSSNMAASASYQSFCQQGRKWETDQCW 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211573g00014 105 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
Stsc211573g00014 105 Gene3D DnaJ domain 1 96 IPR036869 -
Stsc211573g00014 105 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Stsc211573g00014 105 Pfam DnaJ domain 4 67 IPR001623 -
Stsc211573g00014 105 SUPERFAMILY Chaperone J-domain 2 76 IPR036869 -
Stsc211573g00014 105 CDD DnaJ 5 59 IPR001623 -
Stsc211573g00014 105 PRINTS DnaJ domain signature 42 62 IPR001623 -
Stsc211573g00014 105 PRINTS DnaJ domain signature 62 81 IPR001623 -
Stsc211573g00014 105 PRINTS DnaJ domain signature 23 38 IPR001623 -
Stsc211573g00014 105 PRINTS DnaJ domain signature 5 23 IPR001623 -
Stsc211573g00014 105 SMART dnaj_3 2 62 IPR001623 -
Stsc211573g00014 105 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211573g00014 Stsc-Chr211573 79955 80527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211573g00014 5 67 C2H2 Transcription Factor Family AT1G74250 44.776 9.00e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211573g00014 - - adu:107477115 194.897