Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211573g00013 ATGACGAGCATAGTGAAGGAGATCCTGGCCAGCCCTATTCAGATGGCTGACCAGGTCTCTAAGATGGCGGAAGAGACCATCAATTTCCATGGCGAGTGCATGGACATTAAGGCCAAAACCGAGAAGCTCGCCGCCCTCCTCCGCCAAGCCGCCAGGAACAGCAATGACCTCTACGAGAGGCCCACCCGCCGAATCATCGACGACACAGAGCAGGTCCTCGACAAGGCCTTCATCCTCGTCGACAAATGCCGCGGCAACACCTTCTTCAAGCGCCTATTCACCATCATCCCCACCACAGCATTCAAGAAAATCTGCATGCAGCTCGAGAACTCCCTCGGCGACGTCCAGTGGCTCCTCCGCGTCTCCGCCTCCGCAGACGAGCGCGACGACGAGTACCTCGGCCTCCCTCCAATCGCCGCCAACGAGCCCATCCTCTGCCTCATCTGGGAACAAATCGCAAACCTCCTCTCCAACGGCTCCGTGGAGGAACGCTCCGACGCCGCAGCCTCCCTGGTTTCCCTGGCTCGCGACAACGACCGTTACGGGAAACTCATCGTGGAAGAAGGCGGCGTTCCCCCTCTTCTGAAGCTCCTGAAGGAAGGGAAGTTAGAAGGGCAACAAAACGCCGCAAGAGCAATCGGTTTACTCGGGAAGGATCCAGAGAGCGTGGAGCACATCGTGAACGCCGGTGTTTGTTCTGTTTTCGCCAAAATCTTGAAAGACGGTCACATGAAGGTTCAAATCGAGGTGGCTTGGGCAATTTCGGAATTAGCAGCGAATCACCCAAAGTGCCAAGATCATTTCGCTCAGAACAATGCCATCAGATTGCTGGTTAGCCATCTGGCTTTCGAAACCATTCAAGAACATAGCAAATACACAGTTGTCAACAAGCACAAGATGAATGCCATTCACGAACATATCCCTGCTCATCCCATGGCAAACAACCAAGCAAGTACACAGATGCAAAATTTGGTTAACGCCGTCAAGACTAGTGACCAAACGTCGGTGGCCATGACAGAACACAGCAGTAGCCTTAATGCAAAGGTAGTCAGTGATGGCGGTGGAAATATGAATCTGAATACGAATACGAATAATCATAACAACATAGCAGGGGTAAGTATGAACGGGAGGGAGTTTGAGGATCCGAAGACGAAGGCGCAAATGAAGGCAATGGCAGCTAGAGCCTTATGGCAGCTCTGTAAAGGAAACCTCTCCATTTGCAACAACATAACAGAATCACGTGCTCTTCTCTGTTTCGCGGTTCTATTAGAGAAAGGAACCGATGAACTTCGCACCTACTCCGCCTTGGCGTTAATGGAGATCACCGCCGTCGCAGAGATACACCCCGATCTGAGACGATCCGCCTTCAAACCGACTTCCCCGGCGTGCAAAGCCGTGGTGGAGCAGTTCCTGAACGTGATCAAGAAAGGCGACAACAGCGATCTGCTCATACCGTGCGTGAGAGCGGTTGGAAGTCTGGCAAGGACGTTCAGAGCGACGGAGACAAGGTTCATAGAGCCGTTGGTGAAGCTTCTAGATGAGAGGGAACCGGAGGTTTCAGTGGAAGCTGTGATTGCGCTTAACAAATTCGCGTGTACGGAGAACTTCCTGCACGACACGCATTGCAGCGCCATAATCGAAGCTGCTGGAGCAAAGCACTTGGTGCAGCTGGTTTATTTCGCGGAGCAGTCACTGCAGATTCCTTCGGTGATTCTTTTGTGTTATGTGGCGTTGCATGTGCCCAAGAGTGAGACTCTTGCTCAAGAAGACGTGCCTATTGTTCTTGAATGGTGCACGAAGCAGGCACATTTGATTGCGGAGCCTGAAATCGAACAGCTGTTGCCGGAAGCAAAGAGCAGGTTGGAGCTCTATCAATCAAGAGGAGGAACAAGGGCATTCTATTCATGA 1908 0.5231 MTSIVKEILASPIQMADQVSKMAEETINFHGECMDIKAKTEKLAALLRQAARNSNDLYERPTRRIIDDTEQVLDKAFILVDKCRGNTFFKRLFTIIPTTAFKKICMQLENSLGDVQWLLRVSASADERDDEYLGLPPIAANEPILCLIWEQIANLLSNGSVEERSDAAASLVSLARDNDRYGKLIVEEGGVPPLLKLLKEGKLEGQQNAARAIGLLGKDPESVEHIVNAGVCSVFAKILKDGHMKVQIEVAWAISELAANHPKCQDHFAQNNAIRLLVSHLAFETIQEHSKYTVVNKHKMNAIHEHIPAHPMANNQASTQMQNLVNAVKTSDQTSVAMTEHSSSLNAKVVSDGGGNMNLNTNTNNHNNIAGVSMNGREFEDPKTKAQMKAMAARALWQLCKGNLSICNNITESRALLCFAVLLEKGTDELRTYSALALMEITAVAEIHPDLRRSAFKPTSPACKAVVEQFLNVIKKGDNSDLLIPCVRAVGSLARTFRATETRFIEPLVKLLDEREPEVSVEAVIALNKFACTENFLHDTHCSAIIEAAGAKHLVQLVYFAEQSLQIPSVILLCYVALHVPKSETLAQEDVPIVLEWCTKQAHLIAEPEIEQLLPEAKSRLELYQSRGGTRAFYS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211573g00013 635 Pfam Armadillo/beta-catenin-like repeat 219 259 IPR000225 GO:0005515
Stsc211573g00013 635 Pfam Armadillo/beta-catenin-like repeat 184 214 IPR000225 GO:0005515
Stsc211573g00013 635 Gene3D - 363 614 IPR011989 -
Stsc211573g00013 635 Gene3D - 3 121 IPR036537 GO:0007166
Stsc211573g00013 635 SUPERFAMILY ARM repeat 149 597 IPR016024 -
Stsc211573g00013 635 FunFam Armadillo repeat only 2 150 323 - -
Stsc211573g00013 635 Gene3D - 141 300 IPR011989 -
Stsc211573g00013 635 PANTHER ARMADILLO REPEAT ONLY 4 1 628 - -
Stsc211573g00013 635 SMART arm_5 403 443 IPR000225 GO:0005515
Stsc211573g00013 635 SMART arm_5 219 259 IPR000225 GO:0005515
Stsc211573g00013 635 SMART arm_5 459 495 IPR000225 GO:0005515
Stsc211573g00013 635 SMART arm_5 538 578 IPR000225 GO:0005515
Stsc211573g00013 635 SMART arm_5 177 218 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211573g00013 Stsc-Chr211573 71579 73631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211573g00013 152 281 U-box Gene Family AT3G46510 30.000 2.17e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211573g00013 - - gmx:100807066 891.723