Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211573g00012 ATGGTTCTACGACTACGACCGTGGTTGTGTCAAAGAAGGGATCATCGTCATCGTAATAATAACAATAATAATGCAGTGCCTCGGCGTATTGAAGAAGGGTTAATGGCTGAAAGGAGAGAATATATAAATAGGAGGCAGGACATACGGGTAGAACTGAATGATGTTACAGCACAAAGAAATAATAATGCTACGGTAGCTTTGAGAATACTGCCGCCAGTTAGAACATTCGGTGAAGAAGACGAAGCAATTGATGAATGCTGCCCCATTTGCAGGGAAGTGTTTAAGAATGGGGACTTGATTCAACCTTTTAGAAGGAGACATAATCATGAGACCAACAGAGTCACAGAGGCAGCAACATCAGAGCCAATACAGACAGCTTATCGTATTGAACGTTTAATGGCTCATCAGAGAGAATATGTAGATTATAGTAGGCTACAACAACATACACGGCCACAACACAATGATGATGATTTTTCTGCAAAAATAAGCATTGTTAGGAAAGCTTTGAGGGTGTTGCCACCGGTTAAGAGCTTTATTGTTGAAGACAAAAGCAATGGATGCTCTGATATGCTTGAATGCTCTATTTGCATGGAAGTTTTTAAGGTTGGGGAGTTGATTCAACCTCTTGGATTGTGTTCTCATCAGTTTCATTCTTCTTGTCTATATTCTTGGTTGCACAGTGGAAAATCTACCTGTCCCCTTTGCCGTGTGGATTTAGCAACCACATAG 729 0.4074 MVLRLRPWLCQRRDHRHRNNNNNNAVPRRIEEGLMAERREYINRRQDIRVELNDVTAQRNNNATVALRILPPVRTFGEEDEAIDECCPICREVFKNGDLIQPFRRRHNHETNRVTEAATSEPIQTAYRIERLMAHQREYVDYSRLQQHTRPQHNDDDFSAKISIVRKALRVLPPVKSFIVEDKSNGCSDMLECSICMEVFKVGELIQPLGLCSHQFHSSCLYSWLHSGKSTCPLCRVDLATT 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211573g00012 242 SMART ring_2 193 235 IPR001841 -
Stsc211573g00012 242 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 136 236 - -
Stsc211573g00012 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 241 IPR013083 -
Stsc211573g00012 242 Pfam Ring finger domain 192 236 IPR001841 -
Stsc211573g00012 242 SUPERFAMILY RING/U-box 192 240 - -
Stsc211573g00012 242 ProSiteProfiles Zinc finger RING-type profile. 193 236 IPR001841 -
Stsc211573g00012 242 CDD RING-H2 193 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211573g00012 Stsc-Chr211573 65507 68483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211573g00012 154 236 C3H Transcription Factor Family AT2G17450 37.931 2.48e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211573g00012 - K19039 aip:107632256 167.933