Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211573g00011 ATGAGTAGGGTTAGCGGCAAGGTCAAGTGGTTCAATGACCAGAAGGGTTTCGGTTTCATAACCCCCGACGATGGCGGCGAAGAACTCTTCGTTCATCAATCTTCGATTCGATCCGAAGGGTTCCGCAGCCTCGCCGAGGGTGAGTCCGTTGAGTTCGCTATAGAGTCTGACCCTGATGGTCGCACCAAGGCCGTTGATGTCACTGGACCTGATGGCGCCAACGTTCAGGGCAGCCGTCGTGGCGGCGGAGGCGGCGGCGGTGGTGGTGGTAGGGGTTACGGCGGTGGACGTGGCGGCGGAGGCTACGGCGGCGGTGGATATGGTGGTGGAGGAGGCTATGGCGGTGGTCGCGGTGGAGGACGTGGTGGCGGTGGATATGGTGGTGGTGGTTACGGAGGAGGAGGAGGTGGTGGCGGTGGCGCATGCTACAGCTGCGGTGGGATGGGTCACATGGCCAGGGATTGCAACCAGGGAGGAGGAGGAGGTGGAGGCAGGTACGGCGGAGGCGGCGGCGGCGGTGGTGGCGGAAGCTGCTACAGCTGTGGGGATTCTGGGCATTTTGCAAGGGACTGCCCACAAGGCTCTCGCTGA 591 0.6311 MSRVSGKVKWFNDQKGFGFITPDDGGEELFVHQSSIRSEGFRSLAEGESVEFAIESDPDGRTKAVDVTGPDGANVQGSRRGGGGGGGGGGRGYGGGRGGGGYGGGGYGGGGGYGGGRGGGRGGGGYGGGGYGGGGGGGGGACYSCGGMGHMARDCNQGGGGGGGRYGGGGGGGGGGSCYSCGDSGHFARDCPQGSR 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211573g00011 196 ProSiteProfiles Cold-shock (CSD) domain profile. 3 69 IPR002059 GO:0003676
Stsc211573g00011 196 Gene3D - 1 81 IPR012340 -
Stsc211573g00011 196 MobiDBLite consensus disorder prediction 56 89 - -
Stsc211573g00011 196 Gene3D - 173 196 - -
Stsc211573g00011 196 Gene3D - 137 165 - -
Stsc211573g00011 196 CDD CSP_CDS 4 69 IPR002059 GO:0003676
Stsc211573g00011 196 ProSiteProfiles Zinc finger CCHC-type profile. 178 193 IPR001878 GO:0003676|GO:0008270
Stsc211573g00011 196 SMART c2hcfinal6 177 193 IPR001878 GO:0003676|GO:0008270
Stsc211573g00011 196 SMART c2hcfinal6 141 157 IPR001878 GO:0003676|GO:0008270
Stsc211573g00011 196 SUPERFAMILY Retrovirus zinc finger-like domains 133 194 IPR036875 GO:0003676|GO:0008270
Stsc211573g00011 196 SMART csp_8 5 70 IPR011129 GO:0003676
Stsc211573g00011 196 Pfam 'Cold-shock' DNA-binding domain 5 69 IPR002059 GO:0003676
Stsc211573g00011 196 PRINTS Cold shock protein signature 42 60 IPR002059 GO:0003676
Stsc211573g00011 196 PRINTS Cold shock protein signature 6 21 IPR002059 GO:0003676
Stsc211573g00011 196 PRINTS Cold shock protein signature 27 36 IPR002059 GO:0003676
Stsc211573g00011 196 SUPERFAMILY Nucleic acid-binding proteins 3 69 IPR012340 -
Stsc211573g00011 196 PANTHER COLD SHOCK DOMAIN PROTEIN 2 111 193 - -
Stsc211573g00011 196 ProSitePatterns Cold-shock (CSD) domain signature. 17 36 IPR019844 -
Stsc211573g00011 196 Pfam Zinc knuckle 141 156 IPR001878 GO:0003676|GO:0008270
Stsc211573g00011 196 Pfam Zinc knuckle 177 193 IPR001878 GO:0003676|GO:0008270
Stsc211573g00011 196 ProSiteProfiles Zinc finger CCHC-type profile. 142 157 IPR001878 GO:0003676|GO:0008270
Stsc211573g00011 196 FunFam Cold shock protein 1 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211573g00011 Stsc-Chr211573 58294 58884 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Stsc211573g00011 CSD 6.7e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211573g00011 - - adu:107476544 157.918