Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211573g00003 ATGGGTAGAGTAATCTCTTTGCTCGTTCAGCCAAGATTCGTCCTTTTATACCTTGCTCTTTCAATCTTCATCATTTTCTCCCTCTATGGCTCTAAACAGGATGAGGTGATATTAGAAGAGGAGCCTGAAATTACACACAGGGTTTTCTTGGATATTGATATTGATAAACAGCGTTTAGGTAGGATCGTGATTGGATTATATGGCCATGTTGTACCAAAAACTGTTGAAAATTTCAGAGCTTTGTGCACAGGGGAAAAAGGCAAGAGTTCTAGTGGCGTAAAACTTCATTACAAAGGAACACCACTTCATCGGATAATATCTGGTTTTGTGATTCAGGGTGGAGACATTGTTCATCGTGATGGCAAAGGAACTGAATCTATTTATGGTGGCACCTTCCCTGATGAGAATTTCAAAATAAAAAACTCTCATGCTGGTGTTGTTGCTATGGCAAATTCAGGACCTGATTCAAATGGCTCCCAGTTTTTTATTACCACAGTGAAGGCCTATTGGTTGGATGGTGAGCATGTTGTCTTTGGAAAGGTTATTCAAGGCATGGATAATGTGTTTGCGATTGAAGGGGGAGCTGGAACGTATAGCGGAAAACCCAGAAAGAAGGTGGTCATTGCAGATTGTGGGGAGATACCGAAGAGCCAGTGGGATGAGGAAAGTTCAGCTTCCAAATTTCAGTGA 690 0.4145 MGRVISLLVQPRFVLLYLALSIFIIFSLYGSKQDEVILEEEPEITHRVFLDIDIDKQRLGRIVIGLYGHVVPKTVENFRALCTGEKGKSSSGVKLHYKGTPLHRIISGFVIQGGDIVHRDGKGTESIYGGTFPDENFKIKNSHAGVVAMANSGPDSNGSQFFITTVKAYWLDGEHVVFGKVIQGMDNVFAIEGGAGTYSGKPRKKVVIADCGEIPKSQWDEESSASKFQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211573g00003 229 Gene3D - 36 220 IPR029000 -
Stsc211573g00003 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 IPR002130 GO:0000413|GO:0003755
Stsc211573g00003 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413|GO:0003755
Stsc211573g00003 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 172 IPR002130 GO:0000413|GO:0003755
Stsc211573g00003 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 IPR002130 GO:0000413|GO:0003755
Stsc211573g00003 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 114 IPR002130 GO:0000413|GO:0003755
Stsc211573g00003 229 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 47 214 - -
Stsc211573g00003 229 SUPERFAMILY Cyclophilin-like 43 214 IPR029000 -
Stsc211573g00003 229 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 52 212 IPR002130 GO:0000413|GO:0003755
Stsc211573g00003 229 FunFam Peptidyl-prolyl cis-trans isomerase 34 220 - -
Stsc211573g00003 229 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 49 213 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211573g00003 Stsc-Chr211573 20345 23479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211573g00003 60 208 U-box Gene Family AT5G67530 42.000 4.01e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211573g00003 - - gmx:100800775 372.859