Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211571g00013 ATGGCAAAGGTAAGGGAGAAGTTATACGTTACTGTTCCGAGTTTATTCAGATGCCCAATTTCGATGGATGTGATGAGGTCTCCCGTAAGTCTGTGTACCGGCGTCACATACGATCGATCCAGCATCCAGCGCTGGCTCGAATCAGGTCATGACACGTGTCCTGCCACCATGCAGGTCCTCCCTTCCAAGGACTTCATTCCAAATCTCACGCTCCACCGCCTCATCCGCCTATGGCTCATCTCAGCTGCCGGAGAACCATCCTCGCCCTCCGAATCACGGATCTCCGCCGCAAGCGATCGTATCCGTGCTCTTCTCGCCGGAATCCAAACCGACGCTGAGGATTTCGCTGCTTCGCTCTCTGAGCTCGCCGAATTTTCCAGATTCTCCGCCGACAACCGCCGTGTCCTCGTGAGCTTCCCTGGATTCGATTCCGCCATAGCTCGAGCTTTGGCTGGAAGCAGGTCGCGGATTGAAGCTTTGGAAAACGTGATCGCGGTTCTGGATTTGGTACTCCGGGAGAACGGGAATTCAGATTCCGGAGCCGGAGAGAGGATCCGGCGGTCTATCCTCGATACTCGCGAAGATTGCTTAGGAGCGATAGCTTTTGCAATTGAGAACGGATCTGCGAAATTGAAGGTCGCATCGGTTAGAGTTTTGGAGTTTCTCGCCGGCGAGTTTCAATCGAAGCGGTGGATCGCGGAAACGCGAGGCTTGTTGTCACAGCTCGTGAAGCTTCTGAACGACGGAACTGAGGAACTAAACGGCGCCGTTTTGTCGCTGTTGGCTTCGGTTTCGGTGACACAGTCGGCGAAAGCCGAGCTTGTCCGTTTGGAAATCATCAAGGCGGTTTCGAAGACGCTGCAGAGCGCCGCCTGCAGCGGTTCCATGGCGGATAAGTGCCTGAGAGTGCTGGCGGTAGTGGCGACGTGCGCTGATGGCAGGGCAGCGATGGGCGGAGATCTTTCGTGCGCGGCGGCAGTGGTGGAGAGACTGGCGAAGGCAGGGAAGGCGGCGACGGAGGACGCGGTGGCGGTGCTGTGGAGCCTGTGCTGCCTTTGCGGCAACGAAAAGGTGAGAGATGAGGTGGCGAAGCGAAACGGCGTCGCAGTGGTGCTTTTGGTTATGCAGAGAGGATGTGAGGATCACGTGAGGAGCATGTGCGTGGATTTGATTAAGGTTCTTAGGAAAAACGGGTTGCCCTTGGCACTTGGATTAAGCTATGACACCAAAACTACTCATATTAAGCCCTGCTAA 1254 0.5566 MAKVREKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRSSIQRWLESGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLISAAGEPSSPSESRISAASDRIRALLAGIQTDAEDFAASLSELAEFSRFSADNRRVLVSFPGFDSAIARALAGSRSRIEALENVIAVLDLVLRENGNSDSGAGERIRRSILDTREDCLGAIAFAIENGSAKLKVASVRVLEFLAGEFQSKRWIAETRGLLSQLVKLLNDGTEELNGAVLSLLASVSVTQSAKAELVRLEIIKAVSKTLQSAACSGSMADKCLRVLAVVATCADGRAAMGGDLSCAAAVVERLAKAGKAATEDAVAVLWSLCCLCGNEKVRDEVAKRNGVAVVLLVMQRGCEDHVRSMCVDLIKVLRKNGLPLALGLSYDTKTTHIKPC 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211571g00013 417 SUPERFAMILY RING/U-box 8 80 - -
Stsc211571g00013 417 SUPERFAMILY ARM repeat 194 397 IPR016024 -
Stsc211571g00013 417 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Stsc211571g00013 417 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Stsc211571g00013 417 CDD RING-Ubox_PUB 13 65 IPR045210 -
Stsc211571g00013 417 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Stsc211571g00013 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
Stsc211571g00013 417 FunFam RING-type E3 ubiquitin transferase 12 83 - -
Stsc211571g00013 417 Gene3D - 88 415 IPR011989 -
Stsc211571g00013 417 PANTHER WDSAM1 PROTEIN 11 397 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211571g00013 Stsc-Chr211571 98293 99871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211571g00013 6 416 U-box Gene Family AT5G09800 38.443 1.78e-85 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211571g00013 - - adu:107491069 738.799