Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211571g00010 ATGGATTTCGTTGAAGGCGTCGGAGAGAGCTCGTCGCCGCCGCGGACGTTCGGCGGTTTCAGCAACTACGACATCAGGAACGATGTGTACAATCGCTTGGTGGAAACCGGCCACGATCAGGCTGTGTCGAATCCCGATTTTCGGGAACTGCTTGAAGCTCACTTCAATCGCTTGCCTCCGAGTTATGGACTTGATGTTAATGTGGATAGAGCTGAAGATGTTCTATTGCATCAGAGTCTTCTTAGTTTGGCAAGGGACCCGGAAAAGCGCCCTGTCATCCATGTACGCTTCTTGGAGAACATTTCAGCTCAGGCAGATGGGGAAGAACAAGAAACTGCAAGTACTCATTCTAGTCCAGGGCCATCTAGTCATGCAACTAATGGAGGAGCTGTATCATCTCATAAGAGGACAAGGGATCATGCAACTGACTTTGAGGCTTGCTCGAAGCTTGAGGGCCTAAATTTGGATGTTAGAAAGAACTCCAAGGATATAGAGGAATTTCTTACTGACAGCCTATCCCAGAGGCAGGAGAATTCAAATTTCCCAATACATGAAGTGATATTTTCCACTCTTGACAAGCCAAAGCTTTTAAGTCAGCTGTCAGCTTTGCTGTCCGATATTGGGCTTAACATCCGTGAAGCACATGTTTTCTCCACTACTGATGGCTACTCCCTCGATGTATTTGTGGTGGATGGATGGCCAGTAGAGGAAACAGCTGGTTTGTATGAAGCTATGGAAAAAGCAGTTGCAAGAAGTGAGGGATCATGGTCACGCTCTTCAAATTCGCTTTCAGTTGTGGAGAAACCCTTAGCTGCAGAAGCAAAATGTGGAGATTGGGAGATAGACAAGAGGTTGTTAAAGATTGGAGAAAGAATAGCATCTGGATCCTGTGGAGATTTGTATCATGGGGTTTATCTAGGGCAAGATGTTGCTGTTAAAGTTATGAGATCTGAGCAACTAAATGATGCTTTGGAGGATGAATTTGCTCAAGAAGTTACAATTCTGAAGCAGGTGCACCATAAAAATGTTGTTCGTTTCATTGGTGCATGTACAAAGTCTCCGAATTTGTGTATAGTAACAGAGTATATGCCCGGAGGAAGTCTGTATGATTACCTGCACAAAAACCATAATGTCTTGGAGCTGTCTCCATTACTGAAGTTTGCAATTGATGTTTGCAAGGGTATGGAGTATTTACATAGAAACAACATAATTCACAGGGATTTGAAGACAGCAAATCTCCTGATGGATACAGACAATGTTGTTAAAGTAGCAGATTTCGGTGTAGCTCGATTCCTCAATCAGGAGGGAGTGATGACAGCAGAAACTGGGACATATAGATGGATGGCACCAGAGGTTATCAACCATCAGCCTTACGATCAGAAAGCAGATGTGTTCAGCTTTTCCATAGTACTCTGGGAACTAGTGACAGCAAAGGTGCCTTATGATACAATGACTCCACTACAAGCAGCCTTGGGTGTTAGACAGGGACTGCGCCCAGAACTTCCAAAGCATGGACACCCTAAACTATTATACTTGATGCAAAGATGTTGGGAAGCAGACCCAAGCAACCGGCCGAGTTTCCAGGAGATAACAGTTGAACTTGAGAATATCTTACAAGAAGTTGAGAATGATTCACAAGCTAATGGTGCTTGA 1653 0.4428 MDFVEGVGESSSPPRTFGGFSNYDIRNDVYNRLVETGHDQAVSNPDFRELLEAHFNRLPPSYGLDVNVDRAEDVLLHQSLLSLARDPEKRPVIHVRFLENISAQADGEEQETASTHSSPGPSSHATNGGAVSSHKRTRDHATDFEACSKLEGLNLDVRKNSKDIEEFLTDSLSQRQENSNFPIHEVIFSTLDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEETAGLYEAMEKAVARSEGSWSRSSNSLSVVEKPLAAEAKCGDWEIDKRLLKIGERIASGSCGDLYHGVYLGQDVAVKVMRSEQLNDALEDEFAQEVTILKQVHHKNVVRFIGACTKSPNLCIVTEYMPGGSLYDYLHKNHNVLELSPLLKFAIDVCKGMEYLHRNNIIHRDLKTANLLMDTDNVVKVADFGVARFLNQEGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPKHGHPKLLYLMQRCWEADPSNRPSFQEITVELENILQEVENDSQANGA 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211571g00010 550 ProSiteProfiles Protein kinase domain profile. 286 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211571g00010 550 PRINTS Tyrosine kinase catalytic domain signature 443 453 IPR001245 GO:0004672|GO:0006468
Stsc211571g00010 550 PRINTS Tyrosine kinase catalytic domain signature 397 415 IPR001245 GO:0004672|GO:0006468
Stsc211571g00010 550 PRINTS Tyrosine kinase catalytic domain signature 505 527 IPR001245 GO:0004672|GO:0006468
Stsc211571g00010 550 PRINTS Tyrosine kinase catalytic domain signature 462 484 IPR001245 GO:0004672|GO:0006468
Stsc211571g00010 550 PRINTS Tyrosine kinase catalytic domain signature 360 373 IPR001245 GO:0004672|GO:0006468
Stsc211571g00010 550 Gene3D Phosphorylase Kinase; domain 1 274 363 - -
Stsc211571g00010 550 SMART serkin_6 286 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211571g00010 550 SUPERFAMILY Protein kinase-like (PK-like) 272 539 IPR011009 -
Stsc211571g00010 550 MobiDBLite consensus disorder prediction 103 138 - -
Stsc211571g00010 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Stsc211571g00010 550 FunFam Serine/threonine-protein kinase isoform 1 277 364 - -
Stsc211571g00010 550 SUPERFAMILY ACT-like 184 251 IPR045865 -
Stsc211571g00010 550 Gene3D Transferase(Phosphotransferase) domain 1 364 549 - -
Stsc211571g00010 550 Pfam Protein tyrosine and serine/threonine kinase 286 533 IPR001245 GO:0004672|GO:0006468
Stsc211571g00010 550 CDD STKc_MAP3K-like 292 534 - -
Stsc211571g00010 550 MobiDBLite consensus disorder prediction 105 132 - -
Stsc211571g00010 550 ProSiteProfiles ACT domain profile. 185 259 IPR002912 -
Stsc211571g00010 550 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 112 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211571g00010 Stsc-Chr211571 68925 76162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211571g00010 24 546 MAP Kinase Kinase Kinase AT4G35780 49.907 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc211571g00010 PK_Tyr_Ser-Thr 1.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211571g00010 - - gmx:100797987 920.228