Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211571g00006 ATGGACCCGAAGTTCATGGCGAAGCCACCTCCGCCTTCCGCCGTCGACATAGAACGCATGCCGGAGCGTGGCTCTCACCACCGCCGCTCCCACTCCGACACCTCTTTCCGCTTCGCCGGAAACTTCGACGACCTCCTCCTCTTCGACCCTTCCGACCTCGACATATCCAACCTCCCTTCTCCTCTTCCCCTTCCCACCCCTGCCACCGCAAGCGGCGGAGGCAGCGGCGGCGTTCCCATGGCTATCGATTCCGATGAGTCTAGCGGTCAGAGCGGGATGGGGAGAGTCGGTGGCGGTGCTCCGATGGGCCACCTACGGAGCTTGTCAGTTGACTCGGACTTCTTCGATGGTTTGGGGTTCGGCGGCGTCGCCGGAGAAGAAAAATCCGGCGGGAAAATCAGCGGCGGTGGAGGAGGAGAGAGAATAGTTGGACATCACCGGCATAGTAATTCGATGGATGGATCATCAACGACGTCGTTTGAAGCAGAGTCATCGATGATGGATGGTGTGAAGAAAGCCATGGCTCCTGATAAGCTCGCTGAGCTTGCTCTTATTGATCCCAAGAGAGCCAAGAGAATTCTTGCGAATCGGCAATCAGCTGCGAGATCAAAGGAGAGAAAGATTCGGTACACAAGTGAACTTGAGAAGAAGGTGCAGACTCTTCAGACTGAAGCCACTAACCTCTCTGCTCAACTTACCATGCTCCAGAGAGACACAACAGATTTAACTGCAGAGAATAAGGAGCTTAAACTGCGGTTAGAGGCTATGGAACAAGAAGCACAGCTTAGAGAAGATCTGAATTCGGCTTTGAAGGAAGAATTGCAGCGCCTTAGGGAACAGAGTACCCGTTTGGGTGCTATGAGTGGTGGTAACCATAACTTTGGTGGTATGTTCTCTCAATTGGCTTCTCAATTAGCCATGCAACAGTTGAATAATCATCCTCCGACGACACAACAGCCGCAGGTCGGCATGCCTCCTCCTCGTCCCTCTGATCAGCCTTTCCTCGGGCAGCACGGCCAGCGCCGCCCGAACTTCATGGACTTCAATCAGAAGAAGTAG 1059 0.5411 MDPKFMAKPPPPSAVDIERMPERGSHHRRSHSDTSFRFAGNFDDLLLFDPSDLDISNLPSPLPLPTPATASGGGSGGVPMAIDSDESSGQSGMGRVGGGAPMGHLRSLSVDSDFFDGLGFGGVAGEEKSGGKISGGGGGERIVGHHRHSNSMDGSSTTSFEAESSMMDGVKKAMAPDKLAELALIDPKRAKRILANRQSAARSKERKIRYTSELEKKVQTLQTEATNLSAQLTMLQRDTTDLTAENKELKLRLEAMEQEAQLREDLNSALKEELQRLREQSTRLGAMSGGNHNFGGMFSQLASQLAMQQLNNHPPTTQQPQVGMPPPRPSDQPFLGQHGQRRPNFMDFNQKK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211571g00006 352 MobiDBLite consensus disorder prediction 311 352 - -
Stsc211571g00006 352 SMART brlzneu 184 248 IPR004827 GO:0003700|GO:0006355
Stsc211571g00006 352 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 328 - -
Stsc211571g00006 352 MobiDBLite consensus disorder prediction 19 34 - -
Stsc211571g00006 352 CDD bZIP_plant_RF2 189 238 IPR044759 GO:0003700|GO:0006355
Stsc211571g00006 352 Gene3D - 187 241 - -
Stsc211571g00006 352 MobiDBLite consensus disorder prediction 1 34 - -
Stsc211571g00006 352 Pfam bZIP transcription factor 188 246 IPR004827 GO:0003700|GO:0006355
Stsc211571g00006 352 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 186 249 IPR004827 GO:0003700|GO:0006355
Stsc211571g00006 352 SUPERFAMILY Leucine zipper domain 188 240 IPR046347 GO:0003700|GO:0006355
Stsc211571g00006 352 Coils Coil 211 287 - -
Stsc211571g00006 352 MobiDBLite consensus disorder prediction 1 16 - -
Stsc211571g00006 352 FunFam Transcription factor VIP1 187 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211571g00006 Stsc-Chr211571 49470 51914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211571g00006 16 334 bZIP Transcription Factor Family AT1G43700 48.980 9.31e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc211571g00006 bZIP_1 1.7e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211571g00006 K20557 - gmx:778142 417.157