Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211571g00005 ATGATTAAAGTGACACAAAAAGTAAGAAAAAGAAAAAGAAAAGGAAGCTCAAGGAAGAAGAAGAAGAAACAAAAAGATCCATTGATGGACCCGAAGTTCATGGCGAAGCCACCTCCGCCTTCCGCCGTCGACATAGAACGCATGCCGGAGCGTGGCTCTCACCACCGCCGCTCCCACTCCGACACCTCTTTCCGCTTCGCCGGAAACTTCGACGACCTCCTCCTCTTCGACCCTTCCGACCTCGACATATCCAACCTCCCTTCTCCTCTTCCCCTTCCCACCCCTGCCACCGCAAGCGGCGGAGGCAGCGGCGGCGTTCCCATGGCTATCGATTCCGATGAGTCTAGCGGTCAGAGCGGGATGGGGAGAGTCGGTGGCGGTGCTCCGATGGGCCACCTACGGAGCTTGTCAGTTGACTCGGACTTCTTCGATGGTTTGGGGTTCGGCGGCGTCGCCGGAGAAGAAAAATCCGGCGGGAAAATCAGCGGCGGTGGAGGAGGAGAGAGAATAGTTGGACATCACCGGCATAGTAATTCGATGGATGGATCATCAACGACGTCGTTTGAAGCAGAGTCATCGATGATGGATGGTGTGAAGAAAGCCATGGCTCCTGATAAGCTCGCTGAGCTTGCTCTTATTGATCCCAAGAGAGCCAAGAGAATTCTTGCGAATCGGCAATCAGCTGCGAGATCAAAGGAGAGAAAGATTCGGTACACAAGTGAACTTGAGAAGAAGGTGCAGACTCTTCAGACTGAAGCCACTAACCTCTCTGCTCAACTTACCATGCTCCAGAGAGACACAACAGATTTAACTGCAGAGAATAAGGAGCTTAAACTGCGGTTAGAGGCTATGGAACAAGAAGCACAGCTTAGAGAAGATCTGAATTCGGCTTTGAAGGAAGAATTGCAGCGCCTTAGGGAACAGAGTACCCGTTTGGGTGCTATGAGTGGTGGTAACCATAACTTTGGTGGTATGTTCTCTCAATTGGCTTCTCAATTAGCCATGCAACAGTTGAATAATCATCCTCCGACGACACAACAGCCGCAGGTCGGCATGCCTCCTCCTCGTCCCTCTGATCAGCCTTTCCTCGGGCAGCACGGCCAGCGCCGCCCGAACTTCATGGACTTCAATCAGAAGAAGTAG 1143 0.5232 MIKVTQKVRKRKRKGSSRKKKKKQKDPLMDPKFMAKPPPPSAVDIERMPERGSHHRRSHSDTSFRFAGNFDDLLLFDPSDLDISNLPSPLPLPTPATASGGGSGGVPMAIDSDESSGQSGMGRVGGGAPMGHLRSLSVDSDFFDGLGFGGVAGEEKSGGKISGGGGGERIVGHHRHSNSMDGSSTTSFEAESSMMDGVKKAMAPDKLAELALIDPKRAKRILANRQSAARSKERKIRYTSELEKKVQTLQTEATNLSAQLTMLQRDTTDLTAENKELKLRLEAMEQEAQLREDLNSALKEELQRLREQSTRLGAMSGGNHNFGGMFSQLASQLAMQQLNNHPPTTQQPQVGMPPPRPSDQPFLGQHGQRRPNFMDFNQKK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211571g00005 380 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 25 356 - -
Stsc211571g00005 380 MobiDBLite consensus disorder prediction 47 62 - -
Stsc211571g00005 380 MobiDBLite consensus disorder prediction 339 380 - -
Stsc211571g00005 380 MobiDBLite consensus disorder prediction 1 22 - -
Stsc211571g00005 380 MobiDBLite consensus disorder prediction 1 64 - -
Stsc211571g00005 380 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 214 277 IPR004827 GO:0003700|GO:0006355
Stsc211571g00005 380 Gene3D - 215 269 - -
Stsc211571g00005 380 Pfam bZIP transcription factor 216 274 IPR004827 GO:0003700|GO:0006355
Stsc211571g00005 380 CDD bZIP_plant_RF2 217 266 IPR044759 GO:0003700|GO:0006355
Stsc211571g00005 380 Coils Coil 239 315 - -
Stsc211571g00005 380 SMART brlzneu 212 276 IPR004827 GO:0003700|GO:0006355
Stsc211571g00005 380 FunFam Transcription factor VIP1 215 268 - -
Stsc211571g00005 380 SUPERFAMILY Leucine zipper domain 216 268 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211571g00005 Stsc-Chr211571 49377 51914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211571g00005 44 362 bZIP Transcription Factor Family AT1G43700 48.980 1.17e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc211571g00005 bZIP_1 1.9e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211571g00005 K20557 - gmx:778142 417.157