Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211571g00004 ATGGTTCACAAATTTTCATCCATAAATACCCTTCTTCATAGCGTGTGTCACCCACACGCTCTAATCCATACACATTCTTCATTCATCATCATCACAGTTTCTTATTCTTCTTCTTCTTTTCTAATGGCATCAAATAATCTTCAGGGTTCCCTCAACAACAACACCAAACTAGTCCTTCATAACAATGATCTTGAGCAACAACAACCAGCAACAACAACAACTTCACTTGAGATCATTGAAACCAATAAGAAGGAGAAAGAAGAAGACTTCTTTGACTACTCTAAAAGATCTCAATGGCTACGTGCTGCTGTTCTTGGAGCCAATGACGGATTGGTTTCAACAGCATCACTAATGATGGGCGTCGGAGCAGTTAAACAAGACATCAAAGCCATGATCCTCACTGGCTTCGCCGGCTTAGTTGCTGGTGCTTGTAGCATGGCTATAGGCGAGTTTGTTTTTGTCTACTCGCAGCTCGACATCGAAGTCGCTCAAATCAAGAGGGACAAGGAAAGAGTAAACAACAACACCCATCATAATAATAATTCTGATGAAAAATATGTAGAAGATGAAGAAGAGAAGTTGCCAAACCCTTTGCAAGCAGCAGCAGCATCAGCTTTAGCATTTTCTGCAGGTGCAATGGTGCCATTGCTTTCAGCTTCTTTCATAAGGGAATATAAGGTGAGGCTTGGTGTGATTGTGGCTGCTGCGACCTTTGCTTTGGTTCTGTTTGGTTGGTTAGGTGCTGTTCTTGGGAAGGCTCCTGTTTTGAAGTCTTCTTTAAGGGTCCTTCTTGGTGGTTGGATGGCCATGGCCATCACTTTTGCTCTTACCAAGTTGATAGGATCAAGTGCTCTCTAG 858 0.4254 MVHKFSSINTLLHSVCHPHALIHTHSSFIIITVSYSSSSFLMASNNLQGSLNNNTKLVLHNNDLEQQQPATTTTSLEIIETNKKEKEEDFFDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVFVYSQLDIEVAQIKRDKERVNNNTHHNNNSDEKYVEDEEEKLPNPLQAAAASALAFSAGAMVPLLSASFIREYKVRLGVIVAAATFALVLFGWLGAVLGKAPVLKSSLRVLLGGWMAMAITFALTKLIGSSAL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211571g00004 285 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 73 280 IPR008217 GO:0005384|GO:0030026
Stsc211571g00004 285 Coils Coil 155 175 - -
Stsc211571g00004 285 CDD Nodulin-21 98 254 - -
Stsc211571g00004 285 Pfam VIT family 187 277 IPR008217 GO:0005384|GO:0030026
Stsc211571g00004 285 Pfam VIT family 100 180 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211571g00004 Stsc-Chr211571 38972 39829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211571g00004 82 285 Nodulin-like Gene Family AT3G43660 68.627 3.10e-98 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211571g00004 K22736 - gmx:100807991 318.931