Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211571g00001 ATGCTGGGGGACTCAGCTGTGTTGGGAACAGGAGGAGGCAGCTCTGGAGGAGGAGGAGGAGCCGATGCAGTAGCCACAACAGCCGCAGCTATAACTACAGCTGCGGCCGTTATTACTACTGCATCAGCACCACCGCCGCCACCACAATCAGCAGCACCACATCCTCACGATAGTGGTGCTGCTGAAATGGGTGGTGGCGGTGGAGGCGGAGGAGGATCGACCTCCGGAGACGAGGAGAAAGGGGAGAGGAGCTTCGGCGGGAACAGGTGGCCGAGACAAGAGACTTTGGCTTTGCTCAAAATACGGTCGGATATGGACGTGGCTTTTCGTGATGCCAGTGTTAAAGGTCCTTTGTGGGAAGAGGTTTCAAGGAAGCTAGCAGAGCTTGGGTACCACAGGAACGCGAAGAAATGCAAAGAGAAATTCGAAAACGTTTACAAGTACCACAAGAGAACCAAAGATGGTAGAACTGGAAAATCAGAAGGGAAAACATATAGATTCTTTGATCAATTAGAGGCACTTGAAAACAATCCTCCACCGCCGCAGCCGCAACCGCCACCAACCGCATCAGTATCAGCAGCATTGCAAGCAACACCAGTGTCAATGGTAAAAACAACTGCATCATTGCAATCACCTCCAGTAATTACAACAATGCCACATCAACAACAAGCAGTAGTAGTGAGTAGTAGTGGTGGCACTACTACTGTTCCATCAATAGCTACCACTACTACTATTTCAATGCCACAAATCATTCAACCCATTAATAATAATAATATTAATAATAATAATTCTGCATATTTTCCACCACCACCGGTCTCTTCATCTTTTCCTAGTATTCCGGCGGGGCTACTCTCGAATTCGAGTTCTTCTTCGACTTCGTCGGAGGAGACGATCGAAGGCGGGAGTAGGCGCAACAAGAGGAAGAGAAGGTGGAAGGATTTCTTCGAGAAGCTAATGAAGGAGGTGATAGAGAAGCAGGAGGATCTGCAGAAGAGGTTCCTTGAGGCAATAGAGAAGAGGGAGAAAGAGAGATCCGCAAGAGAAGAATCATGGAGGTTGCAAGAGTTACAAAGAATCAATAAGGAGAGAGAGATTCTCGCTCAAGAGAGATCCATCGCCGCCGCCAAAGATCAAGCTGTTATGTCCTTCTTGCACAAGATTGCTGAACAACAAAAACTCCCTACACCATTGAACAATGTTTCTCAGCCGCCGCCACCGCCGCCGCCACCGGTCATAGTGCAGCAGCAACAACAGCAACTGCAACAACAGCAACCGCAACAACCACAAATTGTTACTACTGTTGTTGCTGCTGCTGCTGCTACGACGCCAGTGGTGGTGCCAATGGCGACACCACCACGGCCGCCTCCGCCGCCGTCAGAGATTGTGAAATTTGTTGATGATAGCAACAACAATGGGGATGGTAATAATAACACTTCAACATTGACGCCGAGTTCTTCACGGTGGCCGAAAGCGGAGGTGGAGGCGCTGATAAACCTGAGAACAAGCCTTGATGCGAAGTACCAAGAGAATGGACCGAAAGGGCCGTTGTGGGAAGAGATTTCCGCTTTGATGAGGAAGCACGGTTATAACAGGAACGCTAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTATTTCAAGAAAGTGAAAGAGAGTAACAAGAGGAGGCCTGAAGATTCCAAGACTTGTCCTTATTTTCACCAGCTTGATGCTCTTTACAGGGAGAAGAAAGGAGCCAAGCAAGACGCTGGTGCTCCTGCCGCCATTACCACAACTCCGCTGATGGTAAGGCCGGAGCAGCAGTGGCCGCCTCAGGCCGCGGCGGAGCCTCAGCCGAGGGAAGTAACCATGGAAGACGCCCAGAAGGGAGACAATGAGGAGATGGAGGAGGAGGAGAAGGATAATATTGATGAAGATGAAGATGACGACGACGATGACGAAGGTGGGAGTAACTATGAGATTGTGGCAAGCAAGCCAGTTTCTGCTGAGTGA 1995 0.4967 MLGDSAVLGTGGGSSGGGGGADAVATTAAAITTAAAVITTASAPPPPPQSAAPHPHDSGAAEMGGGGGGGGGSTSGDEEKGERSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKDGRTGKSEGKTYRFFDQLEALENNPPPPQPQPPPTASVSAALQATPVSMVKTTASLQSPPVITTMPHQQQAVVVSSSGGTTTVPSIATTTTISMPQIIQPINNNNINNNNSAYFPPPPVSSSFPSIPAGLLSNSSSSSTSSEETIEGGSRRNKRKRRWKDFFEKLMKEVIEKQEDLQKRFLEAIEKREKERSAREESWRLQELQRINKEREILAQERSIAAAKDQAVMSFLHKIAEQQKLPTPLNNVSQPPPPPPPPVIVQQQQQQLQQQQPQQPQIVTTVVAAAAATTPVVVPMATPPRPPPPPSEIVKFVDDSNNNGDGNNNTSTLTPSSSRWPKAEVEALINLRTSLDAKYQENGPKGPLWEEISALMRKHGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYREKKGAKQDAGAPAAITTTPLMVRPEQQWPPQAAAEPQPREVTMEDAQKGDNEEMEEEEKDNIDEDEDDDDDDEGGSNYEIVASKPVSAE 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211571g00001 664 ProSiteProfiles Myb-like domain profile. 88 146 IPR001005 -
Stsc211571g00001 664 CDD GT1 88 153 - -
Stsc211571g00001 664 MobiDBLite consensus disorder prediction 1 22 - -
Stsc211571g00001 664 CDD GT1 486 551 - -
Stsc211571g00001 664 ProSiteProfiles Myb-like domain profile. 486 544 IPR001005 -
Stsc211571g00001 664 MobiDBLite consensus disorder prediction 39 91 - -
Stsc211571g00001 664 MobiDBLite consensus disorder prediction 398 413 - -
Stsc211571g00001 664 PANTHER FI21293P1 45 627 - -
Stsc211571g00001 664 FunFam Trihelix transcription factor GT-2 90 151 - -
Stsc211571g00001 664 MobiDBLite consensus disorder prediction 594 664 - -
Stsc211571g00001 664 Pfam Myb/SANT-like DNA-binding domain 88 174 IPR044822 -
Stsc211571g00001 664 Pfam Myb/SANT-like DNA-binding domain 486 573 IPR044822 -
Stsc211571g00001 664 MobiDBLite consensus disorder prediction 624 651 - -
Stsc211571g00001 664 SMART sant 86 148 IPR001005 -
Stsc211571g00001 664 SMART sant 484 546 IPR001005 -
Stsc211571g00001 664 Gene3D - 90 151 - -
Stsc211571g00001 664 Gene3D - 488 549 - -
Stsc211571g00001 664 MobiDBLite consensus disorder prediction 278 298 - -
Stsc211571g00001 664 MobiDBLite consensus disorder prediction 395 425 - -
Stsc211571g00001 664 MobiDBLite consensus disorder prediction 466 487 - -
Stsc211571g00001 664 MobiDBLite consensus disorder prediction 277 307 - -
Stsc211571g00001 664 FunFam Trihelix transcription factor GT-2 488 549 - -
Stsc211571g00001 664 Coils Coil 312 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211571g00001 Stsc-Chr211571 6196 9592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211571g00001 86 602 Trihelix Transcription Factor Family AT1G76890 47.842 2.08e-144 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc211571g00001 Myb_DNA-bind_4 4.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211571g00001 - - gmx:547624 528.48