Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211569g00014 ATGGCGATGGCTGCTTTTGCGTCTGTTTTTATGGGGAACTCTTTGGAAGGAGGGTTGCTTCTTGCCATGTTCAATCTCGCGCATATAGCTGAGGAGTACTTCACGGGGCGATCGATGATTGATGTCAAAGAGTTGAAAGAGAATCATCCTGAGTTTGCCCTTGTTCTTGACACCAGTGGTGATAAGCTTCCTAATACATTTGACTTGGCATACAAGAGTGTTCCTGTGCATGATGTAATTGTAGGATCATATATCCTTGTTGGTGCCGGTGAGTCTGTGCCTGTAGATTGCGAAGTTTTCCAAGGCAGCGCTACAATTACCATCGAGCACTTGACAGGGGAAATCAAACCATTGGAGGCCAAAGTTGGAGATAGAATACCTGGTGGTGCAAGGAACATAGATGGGAGGATAATTGTAAAGGCAACAAAGACATGGAACGAATCAACACTGAGCCGAATTGTGCAATTGACAGAAGAAGCACAGCTGAATAAACCAAAACTTCAAAGGTGGCTGGATGAATTTGGTGAACATTACAGCAAAGTAGTTGTTGTATTATCAGTTGCAATTGCGGTTATTGGGCCAATTTTATTTAAGTGGCCTTTCATTAGCACACCGGCTTGCAGAGGTTCAGTTTACAGAGCCCTAGGGCTCATGGTTGCAGCATCTCCATGTGCTTTGGCTGTGGCCCCATTAGCATATGCAACAGCAATTAGCTCCTGCGCAAGAAAGGGGATATTACTCAAAGGTGGACATGTGCTAGATGCTCTAGCTTCTTGTCATACTATTGCATTTGACAAAACAGGAACATTAACCACAGGCGGACTTCTATTCAAGGCAATTGAACCCATTTATGGTCATAATGTCAGAAACAATGAATCAAACATTGCTTCCTGTTGCATCCCCACCTGTGAGAAAGAAGCACTTGCTGTTGCTGCAGCAATGGAAAAGGGTACTACTCACCCCATTGGAAGGGCTGTGGTTGACCACAGTGAAGGCAAAGACCTCCCGTCTGTTTCTGTTGAAAGTTTTGAGTACTTTCCTGGAAGAGGCCTTATTGCTACTGTTAACAGCATTGAGTCAAGAACTGGAAATGCTAAGCTATTGCAAGCATCGCTTGGGTCTGTAGATTTCATAACATCATTTTGTCAATCTGAAGAGGAGTCAGAAAAGATCAAGGAAGCTGTGACACTGATTCACCTCGAAGATAGGCCTCGTCCAGGGGTATATAATGTAATTCAAGAATTGCAGAATGAAGCAAAGTTACGGGTGATGATGTTAACTGGTGATCACGAGTCTAGTGCGAGGAGAGTTGCAAATGCTGTGGGCATCAGTGAGTTTCATTGCAACCTGAAGCCTGAAGATAAACTGAGTCATGTTAAAGACATCTCAAGAGATACAGGAGGAGGCTTAATTATGGTTGGTGAAGGAATCAATGATGCTCCTGCCCTTGCTGCTGCAACTGTAGGGATTGTGCTTGCTCATCGTGCTAGTGCAACTGCTATAGCTGTTGCTGATGTGTTATTGCTTCGCGAAAATATTTCTGCAGTGCCATTTTGTATTGCCAAGTCTCGCCAAACAACTTCACTGATTAAACAAAATGTGGCCCTGGCATTGTTCTGCATTACCATGGCTTCTCTTCCATCAGTTTTGGGATTTCTTCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCTTGCTTGTTTGTCTCAATTCTATTCGGGCCTTAAATGAACCGTCTTGGTCGTGGAAGAAGGATTTGTTACAATTGATTGGCGAGGTTAAATCTAGGCTACTGCCTCTCCGGACAAATATTAAGGGCTCAAGCAACATTACAACGGCGAGTTTGTAA 1854 0.438 MAMAAFASVFMGNSLEGGLLLAMFNLAHIAEEYFTGRSMIDVKELKENHPEFALVLDTSGDKLPNTFDLAYKSVPVHDVIVGSYILVGAGESVPVDCEVFQGSATITIEHLTGEIKPLEAKVGDRIPGGARNIDGRIIVKATKTWNESTLSRIVQLTEEAQLNKPKLQRWLDEFGEHYSKVVVVLSVAIAVIGPILFKWPFISTPACRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLLFKAIEPIYGHNVRNNESNIASCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVESFEYFPGRGLIATVNSIESRTGNAKLLQASLGSVDFITSFCQSEEESEKIKEAVTLIHLEDRPRPGVYNVIQELQNEAKLRVMMLTGDHESSARRVANAVGISEFHCNLKPEDKLSHVKDISRDTGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALFCITMASLPSVLGFLPLWLTVLLHEGGTLLVCLNSIRALNEPSWSWKKDLLQLIGEVKSRLLPLRTNIKGSSNITTASL 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211569g00014 617 SUPERFAMILY HAD-like 261 573 IPR036412 -
Stsc211569g00014 617 Gene3D - 256 524 IPR023214 -
Stsc211569g00014 617 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 1 613 - -
Stsc211569g00014 617 Pfam E1-E2 ATPase 71 243 - -
Stsc211569g00014 617 ProSitePatterns E1-E2 ATPases phosphorylation site. 265 271 IPR018303 -
Stsc211569g00014 617 Gene3D - 37 161 - -
Stsc211569g00014 617 SUPERFAMILY Calcium ATPase, transduction domain A 71 156 IPR008250 -
Stsc211569g00014 617 NCBIfam heavy metal translocating P-type ATPase 1 575 IPR027256 GO:0006812|GO:0016020|GO:0019829
Stsc211569g00014 617 NCBIfam HAD-IC family P-type ATPase 71 285 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211569g00014 617 NCBIfam HAD-IC family P-type ATPase 391 553 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211569g00014 617 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 550 IPR023298 -
Stsc211569g00014 617 PRINTS P-type cation-transporting ATPase superfamily signature 396 407 - -
Stsc211569g00014 617 PRINTS P-type cation-transporting ATPase superfamily signature 419 429 - -
Stsc211569g00014 617 PRINTS P-type cation-transporting ATPase superfamily signature 263 277 - -
Stsc211569g00014 617 PRINTS P-type cation-transporting ATPase superfamily signature 473 492 - -
Stsc211569g00014 617 PRINTS P-type cation-transporting ATPase superfamily signature 497 509 - -
Stsc211569g00014 617 PRINTS P-type cation-transporting ATPase superfamily signature 107 121 - -
Stsc211569g00014 617 Pfam haloacid dehalogenase-like hydrolase 261 486 - -
Stsc211569g00014 617 Gene3D - 274 404 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211569g00014 Stsc-Chr211569 77275 86047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211569g00014 1 598 Primary Pumps ATPases AT4G37270 76.214 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211569g00014 K01534 - gmx:100776309 1052.74