Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211569g00008 ATGGCGATGTCTAGAAGAGAAATGGATCGGATCAAAGGCCCATGGAGCACGGAAGAAGATGAAGCCCTGCAGAGGCTGGTGGAGAGGCACGGGCCCAGGAACTGGACGTTGATAAGCAAGTCCATTCCAGGCCGCTCTGGGAAGTCCTGCAGGCTTAGATGGTGTAACCAACTTTCACCTCAGGTTGAGCACCGGGCCTNNNNNNNNNNAGATGAGGATGAGACGATAATCCGGGCCCATGCCCGGTTCGGTAACAAGTGGGCTACTATAGCCCGACTCCTGACTGGTCGAACCGACAACGCGGTAAAGAATCACTGGAACTCAACGCTCAAGCGCAAGTGCTCATCCATGATGATCGACGAGCCTGTGACAGGCCCGGTAGACTTTGAGGGAGGTTATAATACTCGGCCCGCGAAGAGGTCTGCGAGTGCAGGCCCTGCCATGCCGCTATCCGCCGGGCTTCACCTGAGCCCACCATCGCCGGGAAGCCCGTCGGGATCTGACGGGAGTGAGTGCAGCGTTCGCGCCGTCTCTCCGACTCGCGTGTTGAAGCCCGTCCCGGGGACCGTCGTTCTTCCGATCGAAACTACGTCGTCTTCGGAGGACCCTCCGACGTCGTTGTCGCTGTCGCTGCCGGGTGTAGACGTTGCCGTGGAAGTCTCCAATCGTATCACGGAATCTATGACACATGCCGTTTTGCCGGCGATGGCGATGGCGATGACTTCGGCGTTGTCTTCAACCACTGTAACAACAGCGGCTCCATCGCCGCCATTGCCATCGACGCCGCCACAACAGCAAGTGGTAGCGCCGTTTAGTTTTAGCACGGAGCTGATGGCGGTGATGCAAGAAATGATAAGAAAAGAAGTGAGGAGTTACATGGAACAGCGCAATGGGATGTGTTTTCAGGCTGCGGGTGGGTTCAGAAACGTTTCGGTAAATCGAGTTGGAATTAGCAGAGTCAACTCATGA 969 0.5593 MAMSRREMDRIKGPWSTEEDEALQRLVERHGPRNWTLISKSIPGRSGKSCRLRWCNQLSPQVEHRAXXXXDEDETIIRAHARFGNKWATIARLLTGRTDNAVKNHWNSTLKRKCSSMMIDEPVTGPVDFEGGYNTRPAKRSASAGPAMPLSAGLHLSPPSPGSPSGSDGSECSVRAVSPTRVLKPVPGTVVLPIETTSSSEDPPTSLSLSLPGVDVAVEVSNRITESMTHAVLPAMAMAMTSALSSTTVTTAAPSPPLPSTPPQQQVVAPFSFSTELMAVMQEMIRKEVRSYMEQRNGMCFQAAGGFRNVSVNRVGISRVNS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211569g00008 322 Gene3D - 69 124 - -
Stsc211569g00008 322 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Stsc211569g00008 322 ProSiteProfiles Myb-like domain profile. 65 110 IPR001005 -
Stsc211569g00008 322 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Stsc211569g00008 322 MobiDBLite consensus disorder prediction 129 179 - -
Stsc211569g00008 322 MobiDBLite consensus disorder prediction 158 174 - -
Stsc211569g00008 322 PANTHER MYB PROTEIN-RELATED 12 221 - -
Stsc211569g00008 322 Pfam Myb-like DNA-binding domain 71 109 IPR001005 -
Stsc211569g00008 322 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Stsc211569g00008 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Stsc211569g00008 322 FunFam MYB transcription factor 12 63 - -
Stsc211569g00008 322 CDD SANT 14 56 IPR001005 -
Stsc211569g00008 322 Gene3D - 11 63 - -
Stsc211569g00008 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 114 IPR017930 -
Stsc211569g00008 322 CDD SANT 71 110 IPR001005 -
Stsc211569g00008 322 SMART sant 64 112 IPR001005 -
Stsc211569g00008 322 SMART sant 11 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211569g00008 Stsc-Chr211569 47078 48901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211569g00008 4 320 MYB Transcription Factor Family AT4G37260 50.000 1.89e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211569g00008 Myb_DNA-binding 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211569g00008 K09422 - qsa:O6P43_024595 337.421