Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211568g00011 ATGCTATCAGGGGACATACCCCCAAACCAAACCATTTACATCAAGAACCTCAACGAGAAGATCAAGAAAGACGAGTTAAAGCGATCAATTTATTGCTTGTTCTCTCAATATGGGAGGATCTTGGATGTTGTTGCCCTAAAGACACCCAAGCTTCGAGGACAAGCATGGGTTTGTTTTAGTGAAGTTACTGCTGCCAGTAATGCAGTCCGACAAATGCAAAACTTCCCATTTTATGACAAACCTATGCGAATTCAATATGCAAAATCAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGTTATGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGCCGAAAGAAAGCGGCGTGCTGAAGAAGCACAACAATCTGCTGTGCCTAATGGAACACATGGTGCAAGCAATGGTGGCCCGACGGCCTCGTTTCGTCAAGGTCCTAGCACCCATGAAGCTGTGCCTCCAAATAATATTTTGTTCATAGAGAATTTGCCTCATGAAACTACTGGAAGGATGCTGGAGATGCTCTTTGAACAATACCCAGGTTTTAAGGAAGTGCGCTTGATTGAAGCAAAGCCAGGTATCGCATTTGTAGACTTTGAAGACGAGGTGCAATCATCGATGGCCATGCAGGCTCTTAACGGCTTCAAAATCACCCCGCAGAATCCCATGATTATAACCTTTGCCAAGAAGTAG 702 0.4359 MLSGDIPPNQTIYIKNLNEKIKKDELKRSIYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKEEGSYVPREKKKKQEEKAAERKRRAEEAQQSAVPNGTHGASNGGPTASFRQGPSTHEAVPPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALNGFKITPQNPMIITFAKK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211568g00011 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Stsc211568g00011 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 220 IPR000504 GO:0003723
Stsc211568g00011 233 CDD RRM1_U1A_like 11 88 - -
Stsc211568g00011 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Stsc211568g00011 233 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Stsc211568g00011 233 FunFam U2 small nuclear ribonucleoprotein B'' 150 233 - -
Stsc211568g00011 233 MobiDBLite consensus disorder prediction 98 156 - -
Stsc211568g00011 233 MobiDBLite consensus disorder prediction 98 124 - -
Stsc211568g00011 233 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 90 - -
Stsc211568g00011 233 SMART rrm1_1 160 229 IPR000504 GO:0003723
Stsc211568g00011 233 SMART rrm1_1 11 85 IPR000504 GO:0003723
Stsc211568g00011 233 Coils Coil 104 127 - -
Stsc211568g00011 233 CDD RRM2_U1A_like 157 229 - -
Stsc211568g00011 233 Gene3D - 149 233 IPR012677 -
Stsc211568g00011 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 233 IPR000504 GO:0003723
Stsc211568g00011 233 Gene3D - 4 114 IPR012677 -
Stsc211568g00011 233 MobiDBLite consensus disorder prediction 126 154 - -
Stsc211568g00011 233 SUPERFAMILY RNA-binding domain, RBD 8 222 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211568g00011 Stsc-Chr211568 60842 64319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211568g00011 3 233 Eukaryotic Initiation Factors Gene Family AT1G71770 24.051 1.30e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211568g00011 K11094 - gmx:100805822 413.305