Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211568g00009 ATGGCATCTTCTTCTGGCAGCTTAGACACCACTTCTGCTTCAAATTCTTATACCAATAGCTTCACTTTCTCAACACACCCATTCATGACCACATCTTTCTCTGAACTCTTAGCTTCTTCAGGTGAAGACAAGCCTCGTGGTGGTTCTGGTGTTCCTAAGTTCAAGTCTACACCACCACCATCTCTTCCTCTCTCTCCACCACCCATTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGTTTGAGCCCTGCTGAACTCCTTGATTCCCCTGTTCTTCTTAATCCTTCTAACATTTTGCCATCTCCGACAACTGGGGCATTTGTTGCACAGAGCTACAATAATTGGAAGAACAATAATAACAACAACAACAACAATTCTGGTGGGAACCAACAACAACATGTCATCATCAAAGAGGAAGAAGGAAAGAACAACAACAACAACAGCTTCTCAAACTTCTCTTTCCAAACCCAACCATCTATGTTTCAATCTTCATCAACTGTCACAACTCAAACAGTGCAGCAGCAGCAGCCATGGGGATTTCAAGAATCCAACAACAACAAACAGGAAAATTTCTTGTCATCAAAAAGTATGATGAAAACTGAGAACAACAATGGGTTCCAATCAGATTACAACAACAACAGCAGCAACAACTACCAGCCACAATCTCAGACGCTAAGCAGAAGATCAGATGATGGTTACAATTGGAGAAAATATGGTCAGAAACAAGTGAAAGGGAGTGAGAATCCAAGGAGTTACTATAAATGCACGTTCCCAAATTGCCCTACAAAGAAGAAAGTTGAGAGGTCCTTGGATGGACAAATTACTGAGATTGTTTATAAGGGTACTCATAATCACCCTAAGCCTCAGAACACTAGGAGAAACTCTTCATCTTCTTCTTCTACTTCTGCTGCTCTTGCAAATGTCTCCTACAATCAAGTGAACAACACAGATGTTCCTGATCATCAATCTTATGCCACACATGGTAGTGGACAAATGGATTCTGTTGCCACCCCTGAGAACTCCTCAATTTCAGTTGGGGATGATGATTTTGAGCAAAGCTCTCAGAGGTGTAAATCTGGTGGAGATGATTTTGATGATGATGAACCTGATGCCAAAAGATGGAAAATTGAAGGGGAAAATGAGGGAATATCAGGAGGAGGTGGAAGTAGAACAGTGAGAGAACCAAGGGTTGTGGTTCAGACAACAAGTGACATAGATATCCTTGATGATGGCTACAGATGGAGGAAGTATGGCCAGAAAGTAGTTAAGGGCAATCCAAATCCAAGGAGCTATTACAAGTGCACACACCCAGGTTGTCCAGTGAGGAAGCATGTAGAGAGAGCCTCACATGACCTAAGGGCAGTGATAACAACCTATGAAGGCAAACACAACCATGATGTCCCCGCCGCACGCGGCAGCGGCAGCGGCGGCGGAAGCCATGCCGCTGTCAACAGACCAATGCCAAACAGCAACAACAATGCAAACATTGCAATTAGGCCTTTACCATCAATGACAACACACCACAACAACAACACTAACAACACCACTTCCCTTCAACAAGGGCAATCACCCTTCACACTTGAAATGCTTCAAAACCCTTCAAGCTATGGATTCTCATCTGGGTTTGGGAATCCAATGGGTTCTTATATGCCTCAGCAGCAGCAGCAGCAACAATCTGGCAATGTGTTTTCTTCCAGAGCCAAGGAGGAACCCAGGGATGACATGTTCCTTGAATCTTTGCTATGCTGA 1749 0.4368 MASSSGSLDTTSASNSYTNSFTFSTHPFMTTSFSELLASSGEDKPRGGSGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNPSNILPSPTTGAFVAQSYNNWKNNNNNNNNNSGGNQQQHVIIKEEEGKNNNNNSFSNFSFQTQPSMFQSSSTVTTQTVQQQQPWGFQESNNNKQENFLSSKSMMKTENNNGFQSDYNNNSSNNYQPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSSSSSSTSAALANVSYNQVNNTDVPDHQSYATHGSGQMDSVATPENSSISVGDDDFEQSSQRCKSGGDDFDDDEPDAKRWKIEGENEGISGGGGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSGGGSHAAVNRPMPNSNNNANIAIRPLPSMTTHHNNNTNNTTSLQQGQSPFTLEMLQNPSSYGFSSGFGNPMGSYMPQQQQQQQSGNVFSSRAKEEPRDDMFLESLLC 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211568g00009 582 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 508 IPR044810 GO:0003700
Stsc211568g00009 582 MobiDBLite consensus disorder prediction 351 370 - -
Stsc211568g00009 582 SMART WRKY_cls 408 467 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211568g00009 582 SMART WRKY_cls 229 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211568g00009 582 MobiDBLite consensus disorder prediction 199 233 - -
Stsc211568g00009 582 MobiDBLite consensus disorder prediction 279 370 - -
Stsc211568g00009 582 FunFam WRKY transcription factor 218 289 - -
Stsc211568g00009 582 SUPERFAMILY WRKY DNA-binding domain 400 468 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211568g00009 582 MobiDBLite consensus disorder prediction 56 71 - -
Stsc211568g00009 582 MobiDBLite consensus disorder prediction 142 186 - -
Stsc211568g00009 582 MobiDBLite consensus disorder prediction 199 229 - -
Stsc211568g00009 582 FunFam WRKY transcription factor 33 395 461 - -
Stsc211568g00009 582 Gene3D WRKY domain 214 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211568g00009 582 SUPERFAMILY WRKY DNA-binding domain 228 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211568g00009 582 Gene3D WRKY domain 395 461 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211568g00009 582 Pfam WRKY DNA -binding domain 230 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211568g00009 582 Pfam WRKY DNA -binding domain 409 465 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211568g00009 582 ProSiteProfiles WRKY domain profile. 403 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211568g00009 582 MobiDBLite consensus disorder prediction 35 71 - -
Stsc211568g00009 582 ProSiteProfiles WRKY domain profile. 230 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211568g00009 582 MobiDBLite consensus disorder prediction 464 496 - -
Stsc211568g00009 582 MobiDBLite consensus disorder prediction 529 565 - -
Stsc211568g00009 582 MobiDBLite consensus disorder prediction 284 350 - -
Stsc211568g00009 582 MobiDBLite consensus disorder prediction 529 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211568g00009 Stsc-Chr211568 35735 39481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211568g00009 212 581 WRKY Transcription Factor Family AT2G38470 57.480 1.22e-114 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc211568g00009 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211568g00009 K13424 - gmx:100127393 726.472