Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211567g00006 ATGTGTTTTAGTCACCCAGTTATAGCAGGATTACAACAAGCAGGTGACTTTGAGATGGCACGAGAATGGTTTAGCAACAATGAAGGAGTACGAGCAATCCAGTCTCAATTCATCAACAACAATAACAATGAGGAAGTGATAGTGAAAACCATAAATAAGAGAAGGGTGAAACTGCAGCTCATAATAGACCCTAGTTCAAGAAAAGCCACCTATAAGAAGAGACGTACTGGGTTGTTGAAGAAGATAGAGCAACTCTGCATCCTTTGCGGCATTAAGGCTTGCATTGTCATCTTTGGTCCAGGAGACACAAAGCCTACAGTGTGGCCATCTGTGGAAGAAGCTTCACAGATTGTGCAAAAGTTTGAGGAGATTCCAGAGTAG 381 0.4226 MCFSHPVIAGLQQAGDFEMAREWFSNNEGVRAIQSQFINNNNNEEVIVKTINKRRVKLQLIIDPSSRKATYKKRRTGLLKKIEQLCILCGIKACIVIFGPGDTKPTVWPSVEEASQIVQKFEEIPE 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211567g00006 126 Gene3D - 63 124 IPR036879 GO:0003677|GO:0046983
Stsc211567g00006 126 ProSiteProfiles MADS-box domain profile. 51 99 IPR002100 GO:0003677|GO:0046983
Stsc211567g00006 126 SMART madsneu2 51 110 IPR002100 GO:0003677|GO:0046983
Stsc211567g00006 126 PRINTS MADS domain signature 73 88 IPR002100 GO:0003677|GO:0046983
Stsc211567g00006 126 PRINTS MADS domain signature 53 73 IPR002100 GO:0003677|GO:0046983
Stsc211567g00006 126 PANTHER MADS BOX PROTEIN 55 121 - -
Stsc211567g00006 126 CDD MADS_SRF_like 53 126 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc211567g00006 126 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 61 106 IPR002100 GO:0003677|GO:0046983
Stsc211567g00006 126 SUPERFAMILY SRF-like 53 124 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211567g00006 Stsc-Chr211567 36846 37348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211567g00006 51 122 Type I MADS-box Gene Family AT3G05860 44.444 4.39e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc211567g00006 SRF-TF 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211567g00006 - - adu:107487931 124.405