Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211567g00001 ATGGCTGGGCAATCAGACGCTGAGCTTTCATTATTTTCAGCAGAGGAGCTTGAGTTCATTGCTGAGGATGAGATTGTAGACATTGTGCCCAATCTCAAGATGGGTCCTCTTAATTTCATCTCTGGAGATTTTGGCCCATTTATCCCACAGATTGTTGCCCAAGTACCGCTTTGGCTGGCTGTTGCACTAAAGAAGAGGGGCAAGTGCTCCATTTGCCCTCCTCAATGGATGTCTGTTGATAAGTTGACTCAAGTTTTGGAAGCTGAGCGAAACTCCCAAGAGATGTCGGAGCAACTGCCATTTCATTATGTAGAAATTTCCAGACTTCTGTTTGACCATGCACATGATGACATTCCTGATGCATATATGGTGAGTATAAAAATGGTCCTCCCCTGTAGAATTATGCCTTGGGGCTTCTTTAAATGCTTTGCCTTATTGTCTTCTGTACAGGTGAGATCTCTAATTGAGGACATCAGAGATGTGCGATTTCATAAGGTTGAAACTGACCTGGAGGCATTCAATGGTCGTACAATTGCTGTTAAGATAAAAAATCTGTCTGCTATGGAAGTGAATATCGTTAGGCCATTCATTGGAAGAGCTTTACAGGCATTTTATAAGCATGATAGTCCAGAGTTGATACCGGACCCAGAAAGAGTTCCTGACAGACGACCGCAAGTTGTCCAAAATGCCCCAAGGAGGCAACTGCGAAGATAA 714 0.4356 MAGQSDAELSLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFIPQIVAQVPLWLAVALKKRGKCSICPPQWMSVDKLTQVLEAERNSQEMSEQLPFHYVEISRLLFDHAHDDIPDAYMVSIKMVLPCRIMPWGFFKCFALLSSVQVRSLIEDIRDVRFHKVETDLEAFNGRTIAVKIKNLSAMEVNIVRPFIGRALQAFYKHDSPELIPDPERVPDRRPQVVQNAPRRQLRR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211567g00001 237 FunFam DNA replication complex GINS protein PSF2 12 77 - -
Stsc211567g00001 237 Gene3D - 78 212 - -
Stsc211567g00001 237 Pfam GINS complex protein 54 189 IPR021151 -
Stsc211567g00001 237 CDD GINS_A_psf2 66 209 - -
Stsc211567g00001 237 PIRSF GINS_PSF2 144 237 IPR007257 GO:0005634|GO:0006260
Stsc211567g00001 237 PIRSF GINS_PSF2 2 130 IPR007257 GO:0005634|GO:0006260
Stsc211567g00001 237 SUPERFAMILY PriA/YqbF domain 12 71 - -
Stsc211567g00001 237 SUPERFAMILY GINS helical bundle-like 73 208 IPR036224 -
Stsc211567g00001 237 CDD GINS_B_Psf2 13 74 - -
Stsc211567g00001 237 Gene3D - 12 77 - -
Stsc211567g00001 237 MobiDBLite consensus disorder prediction 214 237 - -
Stsc211567g00001 237 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 149 230 IPR007257 GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211567g00001 Stsc-Chr211567 16232 21693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211567g00001 1 173 Core DNA Replication Machinery Family AT3G12530 60.694 2.33e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211567g00001 K10733 - gmx:100780528 366.311