Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211565g00011 ATGGCAACAAGTGTCAAAGTCATTTCAACAAGCACAATCCATGCAGCAAACAAGGATTTTCCAATGGTGGATAAGGAGATTCCATTAACTCCATGGGATCTCCAACTCCTCTTATTTGATCCCATTCAAAATGGACTCCTATTCCGTTACAATAACAAACCCATAACTACTCCAACAATCATAATCCAACACCTCAAGCATTCCCTTTCATCCACCCTCTCTTTCTTCCCACCCTTAACGGGCCGCCTTTCCATTACGGAACACGAGGACAACACTTCCTCCGTTTCCGTTACTTGCAACAACTCTGGAGCGCTCTTTGTCCACGCCGTTGCGGACAACTACTCCGTTAATCACAAAATTAACTCCGTTTACACTCCGCGCTTTGTGCACTCTTTCTTCCCGCTTAACGGCGTCAGAAACTACGAAGGAACAACGATGCCGTTGTTGGCGGTTCAAGTAACGGAACTCAACGACGGTTACTTCCTTGGCTGCACCATGAACCACGCTGTTGTAGATGGAACTTCCTTTTGGCATTTCATGAATTCTTGGGCTGAGATCTCACGTGGCTCCCAAGAATTGTCCAAGCCTCCGGTTCTTGAACGTTGGTTCCTTCATGACGGCGTTCATGGCTGCTCCGCCGTGGATGTCATACGAATTCCTTTGACGAAGGAGATGACGACACAACGTGGTTCCAATTCAGAACAACTACTAGGCGAGAGGGTTTTCCATTTCACCAAAGAGAAGATCGCTGAACTCAAGGCAAAAGCCAACGCAGAAATTACTGAAACCAAAAGCAAAAACAAAATATCATCCCTGCAAGTGCTTTTGACTCATCTATGGAGATCCGTGGTTCGGAACCAGCTTCTTGAGGCCGAAGATGAGGTGAAATACATGTCGCCGATAGGTGTTAGGGGGAGAATGAAGAATCCGGCAATGGCAGAAAACTATTTTGGGAATGCAATTACGATCGGAATAGTGACGATGACGGTTAAGGAGCTTCTAGAAGGAGGGATTGGAAAAGGTGCGTTGGAGATGAACAAGATGATTGGTTTGCAAACAGAAGAGAAGTTGAAGAGCTACTCTAGAGATTGGATCAAGAACCCTAGACTTTTGACAGTGGGAGGAGGTTGCTTTGGGAACACTTTACTGCCAAGCAGTTCGCCAAGGTTTGATGTTTATGGAAATGATTTCGGGTGGGGGAAACCGGTGGCGGTAAGGAGCGGTGCCGCGAACAAGAAGCGTCAAAAAATAACCATTTTTCAAGGGATGAAAGATGGAAGTGTTGACCTTGAAGTTTGTCTTTCCCATGAGATATTGGAGGCCATGGGTAAGGACCCTGAGTTTATGGATGCCGTTGTTGAATAA 1365 0.4608 MATSVKVISTSTIHAANKDFPMVDKEIPLTPWDLQLLLFDPIQNGLLFRYNNKPITTPTIIIQHLKHSLSSTLSFFPPLTGRLSITEHEDNTSSVSVTCNNSGALFVHAVADNYSVNHKINSVYTPRFVHSFFPLNGVRNYEGTTMPLLAVQVTELNDGYFLGCTMNHAVVDGTSFWHFMNSWAEISRGSQELSKPPVLERWFLHDGVHGCSAVDVIRIPLTKEMTTQRGSNSEQLLGERVFHFTKEKIAELKAKANAEITETKSKNKISSLQVLLTHLWRSVVRNQLLEAEDEVKYMSPIGVRGRMKNPAMAENYFGNAITIGIVTMTVKELLEGGIGKGALEMNKMIGLQTEEKLKSYSRDWIKNPRLLTVGGGCFGNTLLPSSSPRFDVYGNDFGWGKPVAVRSGAANKKRQKITIFQGMKDGSVDLEVCLSHEILEAMGKDPEFMDAVVE 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211565g00011 454 Pfam Transferase family 4 449 - -
Stsc211565g00011 454 Gene3D - 1 214 IPR023213 -
Stsc211565g00011 454 Gene3D - 220 444 IPR023213 -
Stsc211565g00011 454 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 449 - -
Stsc211565g00011 454 SUPERFAMILY CoA-dependent acyltransferases 24 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211565g00011 Stsc-Chr211565 89482 94417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211565g00011 63 444 Monolignol Biosynthesis Gene Families AT5G48930 27.020 1.59e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211565g00011 - - jre:108985765 453.751