Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211565g00002 ATGTCGTCTTCTTCTTGGGCAATGGAAGCTGAGAGAGAATCAGAACACCACCAAGATCACAACAATAACATCACCACCTTCATGGACGTTGTTAATGGCGACGACCAATATCACAACAACCATGACATTATCACCATGATGATGATGATGAGTAGAGACATGTCTAACAATTTCTTCCCTCCTGAACCAGACACCAACGTTAACAACAACCTCTTTCTCCATTATCATCATTCACCATCTTCAGTAGTAATGGACTCTTCTTCTTCTTGTTCTCCTTCTCCTTCTCCTACCTCCATCTTCACCAATCTTCATCATCATAATCATGACCCTCTTTCTTCTTCTTCTAATTCTTCTTCATCATCATCACACCTTCACTGCTTTCTCCCTCCACCACCACCAAACCCATTTGACCTTGCTTCTTTCCTTGGCCCTCATCATCATCATCAAGATTCCATCATAACCACCACCACTACTACTACTACTACTAATTTTGCAGGGTTTCATCAGAACTTTGATGAACTTGGTTCTTGCTCTTCTTCTTCTGGAAAAGCCACAGCAGAAGAACCATTGTTGTTGTTCAATAATAACAGATCCAAGATTCTGAGACCCCTTGATGATTCTTTGCCACCATCTGGGGCACAACCAACTCTCTTTCAGAAGAGAGCAGCACTCAGAAAAAACAACAACAACAACATCATGCCACCATCTTTATTATTATCCTCATCACAACAACAACAAGGTGGTGTGATGATGGAGATGGAAGATATTAATGGAAGCTTTGATGGGTCATTATCGGCATTCAACTATGATTCCGGCGATGATGAGTTGCTTGATAGCAACAACCACAAGAATGGTGGAGGAGTAGGAGGAGGGGGAGGAGGGAGCAATAATAATAATAATAATAATAATAATAATAATAATGGAAGAGTAGGAGTGGATCAGAAAGCAGGTGGAGGAGGAGGGAAGAATAAGAATAAGGGGATGCCGGCGAAGAACTTGATGGCGGAGCGGCGTCGCCGGAAGAAGCTCAATGATAGGCTCTACATGCTCAGGTCCGTCGTTCCAAAGATTAGCAAAGTAAGACTTTTCTCTCATCTTCACTGTCTCTCTGCATGA 1116 0.4238 MSSSSWAMEAERESEHHQDHNNNITTFMDVVNGDDQYHNNHDIITMMMMMSRDMSNNFFPPEPDTNVNNNLFLHYHHSPSSVVMDSSSSCSPSPSPTSIFTNLHHHNHDPLSSSSNSSSSSSHLHCFLPPPPPNPFDLASFLGPHHHHQDSIITTTTTTTTTNFAGFHQNFDELGSCSSSSGKATAEEPLLLFNNNRSKILRPLDDSLPPSGAQPTLFQKRAALRKNNNNNIMPPSLLLSSSQQQQGGVMMEMEDINGSFDGSLSAFNYDSGDDELLDSNNHKNGGGVGGGGGGSNNNNNNNNNNNNGRVGVDQKAGGGGGKNKNKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKVRLFSHLHCLSA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211565g00002 371 Gene3D - 322 368 IPR036638 GO:0046983
Stsc211565g00002 371 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 161 360 - -
Stsc211565g00002 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 371 IPR011598 GO:0046983
Stsc211565g00002 371 MobiDBLite consensus disorder prediction 1 22 - -
Stsc211565g00002 371 MobiDBLite consensus disorder prediction 101 126 - -
Stsc211565g00002 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 359 IPR036638 GO:0046983
Stsc211565g00002 371 MobiDBLite consensus disorder prediction 101 125 - -
Stsc211565g00002 371 MobiDBLite consensus disorder prediction 271 335 - -
Stsc211565g00002 371 MobiDBLite consensus disorder prediction 291 311 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211565g00002 136 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G12860 36.404 1.13e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211565g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211565g00002 - - ahf:112772589 211.846