Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211564g00017 ATGAAGGAACAAGCAGGGAGGCCAAGTAGGACTATAGTAAACTCGGAGCTATGCCATCGCTACGCGGCCGCGCCCCTTGCATCTTCGCCTCAAAATCTTAAGAGGCCATTAGAATCTGCATTACTGGAGAACACTTTCCTAACAAGTCCATGCATGCCACATTATGATCATGGAACTGTTGAAATGAATAAACTTGGAAACAACAATGGATCCCATTTATGGATTGCTAAGCATGAAGAATCTGTTGCTAAGAGAGCTCTCTTACAACAGATGAACACAACACTGCCTAAAGTTAACCGAAAAGGTCATCTTGCAGGTTTCGGTTCAGGTTCAGTTAGCATAATACCAGAAAATGATCAACATTATTTTGAATTTGATGATCCTTTGCCTCCTCCTGACATGTCTAAATTAGTATCTGAGGTGTTAAGTGATCAGATGTTTGACTTCCCTCAAAGTCAAAATCGGAGTCCATCAACCGTTGGCGTTCCCCAATCGGATTCTGCCAATGTGAATGGCCTAATTCCTCAGCAAGACACAGTTGAATGGATGGTGCATTCTTCTTGCCAACAAGGATTGCAAGAACATCATATAGCAAGATCTGAAGCAGTTTTGAGGAACCTCTCAGCTGAGAGCAACAATCCTAGTGAAATTTGGAATACTACCAATGCTGATGTTAGCAGTGCAAGTGCCACCATGGTTGAGCCTTCAGATTCAAGTGCCATTTTGGATGAATTTTGCACACTGGAGGACAAGGATTTTCAGGAACTATCAGATTGCATGGCGACCAACTTCGGTATGAGCCAGGATGTCCAGTCTCAGATAACATCAACAAGTCTAGCTGAGCCCCATGCCTTTTCTGTGCAAGACCTCGCCATCAACGCAGGCAGTGCATCTTCAAGCAAGGTTGATTTTGATGAATGCAGCTTTCTGCAAAATAATTCAAGGCCTCAAGTAGCTGCAAAAGCTCCACCGAGGCGTACCTACACTAAGGTACAAAGGGCTGGTTCTGTGGGAAGATCAATTGATGTAACTGCTTTCAAGAACTATGAAGAACTGATACATGCAGTTGAATCCATGTTCGGACTAGAGGGTCTGCTTAATGACACCAAAGGCAGAGATTCAGAATGGAAATTAGTATATATTGATTACGAAAATGATGTTCTACTTGTTGGGGATGATCCTTGGGGGGAATTTGTGGGCTGCGTCCGCTGCATCAGAATTTTGTCACCTACAGAAGTTCACAAGATGAAAATGAACTAA 1260 0.4317 MKEQAGRPSRTIVNSELCHRYAAAPLASSPQNLKRPLESALLENTFLTSPCMPHYDHGTVEMNKLGNNNGSHLWIAKHEESVAKRALLQQMNTTLPKVNRKGHLAGFGSGSVSIIPENDQHYFEFDDPLPPPDMSKLVSEVLSDQMFDFPQSQNRSPSTVGVPQSDSANVNGLIPQQDTVEWMVHSSCQQGLQEHHIARSEAVLRNLSAESNNPSEIWNTTNADVSSASATMVEPSDSSAILDEFCTLEDKDFQELSDCMATNFGMSQDVQSQITSTSLAEPHAFSVQDLAINAGSASSSKVDFDECSFLQNNSRPQVAAKAPPRRTYTKVQRAGSVGRSIDVTAFKNYEELIHAVESMFGLEGLLNDTKGRDSEWKLVYIDYENDVLLVGDDPWGEFVGCVRCIRILSPTEVHKMKMN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211564g00017 419 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 417 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc211564g00017 419 Pfam AUX/IAA family 317 413 IPR033389 -
Stsc211564g00017 419 Gene3D - 323 417 - -
Stsc211564g00017 419 FunFam Auxin response factor 321 417 - -
Stsc211564g00017 419 ProSiteProfiles PB1 domain profile. 326 412 IPR000270 GO:0005515
Stsc211564g00017 419 SUPERFAMILY CAD & PB1 domains 339 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211564g00017 Stsc-Chr211564 81918 83525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211564g00017 227 416 B3 DNA Binding Superfamily AT1G19850 59.694 1.77e-65 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc211564g00017 AUX_IAA 3.6e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211564g00017 K14486 - adu:107460158 625.935