LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211564g00014	ATGGGAAGACCAGCGTCTTGCTTCAAGCTAATTATATGCGGCGGCGATGAGGCGGAGAAGGACGGTTACCAGGTAGCTCAGATCAAGGATTCTAATGATAAACGCGGTTGGAGTTTCCGCAAGAGATCTGTAACTGCAAAGCAGCAACGTGTGCTTAGCAATACTGTCACTGCAGCAGATGCCTCATCTGCGAATAAGGATTTTGATTTTGCACCACTTCCTCAACCTAACATTATTAAGAAGCCCGATTTATGCTCCGTTGAGAGTTCAGAAACGAATGTCATTGAATCAGAGATTAAAAAGGACGTGAATGTGAATCCCTCGGAATCTGCTGTTATCACTATCCAGGCTGCTATCAGGGGCTTGCTGGCTCAGAGAGATTTCCTGCTGCTTAAGAGTTTAGTGAAATTGCAAGCTGCTGTTCGGGGGCACTTGGTCCGGAGCCATGCTGTAGGAACCCTTCGTTGTGTTCGAGCCATTTCTAAAATGCAGCTTCTTGTGCGAGCTCGTCGCTCTCAGCAATCACAGGAAAATCAAAGCCACATGAACAAGTCAAATGTGATGGATGCATCCATTGAGAAGCTGCTTAGCAATGGGTTTGCACGCCAGCTATTGGAATCAACACCAAAAAACAAACCTATACATGTCAAGTGTGATCCTTCTAAAGCTGATTCTGCTTGGAAGTGGTTAGAGAGGTGGATGTCTGTATCTTCAAAGTATACTTCAGATGACAAGAAAACAAGTTCCCTGACTGAGGAGTTAGAAATTTATCCACAGACAGCTGACACAAAGCCCAGTGTGGAGCATTCAGTTGTACCTTCCCGGGACGAAGAGAAGTCAATTATTCATGATGCTAATACCTTCAGCTTTCAAGCAACCTGCCCTGCATCACCTCCTAAAAAGGCAGTTGAATTTGGTGCTAAAGTAGCCTCAGCAGAAATCGGTTCTTTTAAAGGTGAAAAATCAGCATCAGATGCAAGTGCCCCAGCAGAGCTTAAATCCCTTCCTCAGAAGCCTGAAATTGATGGCGAGCCACGCAAAAGATCAATGAAAAGATATGCATCAGACCAACTAGAAGCTGAACGCAATAAAGCTAGACATGGATTAAGAAAGGTCAGCAATCCTGCATTTATTGCTGCACAGTCAAAATTTGAAGAGCTGAGTTCGACCATAAATTCTGGTAGGACAAACAGTTTGTCTGACCAAAGTGCAGCAATTGAATCAGAAGCAGACACCTCTTCTGTCAACATGGATACGGCATATAGATCAAAAGAGTTATCTGAGAATTCTGGTATTAAACTATCTATTTCTTTCACTGTTGATTCTCCCAATGTATCTGAGGTTGGTCCTATTGAAGATGACCAAGATGCCAAAGATTTAGAAGGGGTTGGAAATCCTGCCAAGAAAACAAACCTCGATGTTGGTACCAATATTCCAGGTGCTATTCCATCTTCTAACTTAGCCACCTCTGTTTTGGATCAGACACAGACTGTTGATGAAATCAATGGCATTACGGTTCACTCATCAGTTGCTGTGGACTCTAAAGATCCTATTAGTAAGACTGATAAAAATGCATCTGATGTACAGAGAGATCAAAATGAGGATCCTCTGCAAGGTTTCAGATCATCCCTAGAAGCATCACCTAAAACCCACATAACTGTCCCTGAATCACAAGAAACACCTTCAAGTCAGTTATCTATGAAAGCCAAAGACAGCAAAGCTGACAAGTCTGGATCCAACAGTAAACTTGGGACCCCACCAGTGGCTAACAGATCACCTGTAAATGGAAACCATGATTCGAGCTCTAGAGGTCAGCCGAGTGGGAAGCGACGCAACTCATTTGGCTCAGTTAAAGCTGATCACATTGACCAAGAACCTACAGATAGCACAAATAACAATAGTTCTCTTCCTCGTTTCATGCAAGCAACAGAATCAGTTAAGGCCAAAACCAATGCAAATAACTCACCAAGATCAAGTCCGGATGTGCATGGACGAGATGTTCAAGTTAAGAAAAGACATTCGTTACCAGGTGCCACTGCTAGGCAGGTTTCTCCACGCATCCAACGATCGATGTCTCAAGCACAGCAGAACGCGAAGGGAAATGGTGTACAGCCTCAGCCTCCACAAGAGAGAAAATGGCTGAGGTGA	2148	0.4385	MGRPASCFKLIICGGDEAEKDGYQVAQIKDSNDKRGWSFRKRSVTAKQQRVLSNTVTAADASSANKDFDFAPLPQPNIIKKPDLCSVESSETNVIESEIKKDVNVNPSESAVITIQAAIRGLLAQRDFLLLKSLVKLQAAVRGHLVRSHAVGTLRCVRAISKMQLLVRARRSQQSQENQSHMNKSNVMDASIEKLLSNGFARQLLESTPKNKPIHVKCDPSKADSAWKWLERWMSVSSKYTSDDKKTSSLTEELEIYPQTADTKPSVEHSVVPSRDEEKSIIHDANTFSFQATCPASPPKKAVEFGAKVASAEIGSFKGEKSASDASAPAELKSLPQKPEIDGEPRKRSMKRYASDQLEAERNKARHGLRKVSNPAFIAAQSKFEELSSTINSGRTNSLSDQSAAIESEADTSSVNMDTAYRSKELSENSGIKLSISFTVDSPNVSEVGPIEDDQDAKDLEGVGNPAKKTNLDVGTNIPGAIPSSNLATSVLDQTQTVDEINGITVHSSVAVDSKDPISKTDKNASDVQRDQNEDPLQGFRSSLEASPKTHITVPESQETPSSQLSMKAKDSKADKSGSNSKLGTPPVANRSPVNGNHDSSSRGQPSGKRRNSFGSVKADHIDQEPTDSTNNNSSLPRFMQATESVKAKTNANNSPRSSPDVHGRDVQVKKRHSLPGATARQVSPRIQRSMSQAQQNAKGNGVQPQPPQERKWLR	715

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211564g00014	715	MobiDBLite	consensus disorder prediction	337	367	-	-
	Stsc211564g00014	715	MobiDBLite	consensus disorder prediction	516	530	-	-
	Stsc211564g00014	715	PANTHER	IQ-DOMAIN 5-RELATED	1	683	-	-
	Stsc211564g00014	715	ProSiteProfiles	IQ motif profile.	130	159	IPR000048	GO:0005515
	Stsc211564g00014	715	MobiDBLite	consensus disorder prediction	626	661	-	-
	Stsc211564g00014	715	MobiDBLite	consensus disorder prediction	389	414	-	-
	Stsc211564g00014	715	MobiDBLite	consensus disorder prediction	319	367	-	-
	Stsc211564g00014	715	ProSiteProfiles	IQ motif profile.	108	136	IPR000048	GO:0005515
	Stsc211564g00014	715	Pfam	Protein of unknown function (DUF4005)	614	696	IPR025064	-
	Stsc211564g00014	715	MobiDBLite	consensus disorder prediction	681	704	-	-
	Stsc211564g00014	715	MobiDBLite	consensus disorder prediction	443	476	-	-
	Stsc211564g00014	715	SMART	iq_5	130	151	IPR000048	GO:0005515
	Stsc211564g00014	715	SMART	iq_5	107	129	IPR000048	GO:0005515
	Stsc211564g00014	715	MobiDBLite	consensus disorder prediction	508	715	-	-
	Stsc211564g00014	715	Gene3D	-	108	160	-	-
	Stsc211564g00014	715	MobiDBLite	consensus disorder prediction	578	612	-	-
	Stsc211564g00014	715	Pfam	IQ calmodulin-binding motif	110	128	IPR000048	GO:0005515
	Stsc211564g00014	715	Pfam	IQ calmodulin-binding motif	132	149	IPR000048	GO:0005515
	Stsc211564g00014	715	MobiDBLite	consensus disorder prediction	531	568	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211564g00014	Stsc-Chr211564	69699	72757	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211564g00014	88	715	IQD Protein Family	AT1G19870	37.015	3.64e-93	300

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211564g00014	-		-	adu:107460052	1142.87