Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211564g00007 ATGGTCCTCTCCATTCGCCGCCTCGCTGATGGATCCATTGAAGAGGCCACCTTTCGCAAAGAAGCAGAGTCATTAGGGAAAGTAAAGCACCGAAATCTAACTGTTCTTCGTGGATACTACGCAGGAGCACCCGATGTGAGGCTCCTTGTGTATGATTACATGCCAAATGGGAACTTAGGAACATTGCTCCAGGAAGCTTCACAACAAGACGGGCACGTGCTGAATTGGCCAATGCGGCACCTCATTGCACTTGGCATTGCTAGAGGACTAAGTTTCTTGCACTCAGTGCCAATTGTTCATGGTGATGTGAAGCCTCAGAACGTTCTCTTTGATGCAGATTTCGAAGCTCATTTGTCCGAATTCGGGTTAGATAGATTAAGCATAGCAGCATCAGCAGCAGTGGAAGCCTCATCATCTTCAACCCCAGTTGGTAGCTTAGGGTATGTGTCACCGGAGGCAGCATTAACGGGGCAAGCAACGAAGGAAGCAGATGTATACAGCTTTGGGATTGTGTTGTTGGAGATTCTGACAGGGAAGAAACCAGTGACGTTTACACAAGATGAGGACATTGTGAAGTGGGTGAAGAAGCAATTGCAAAGGGGACAGATTTCAGAGTTGTTGGAACCTGGTTTGCTTGAGATAGATCCTGAATCTTCAGAGTGGGAAGAGTTCTTGTTGGGTATTAAGGTGGCTCTGTTGTGCACAGCACCTGACCCTCTTGATCGCCCTTCCATGCCTGACATTGTTTTCATGCTCGAAGGTTGTCGTGTCGGACCGGAGATACCTTCCTCCGCCGATCCTACAACACTGCCTTCCCCTGCATGA 825 0.4861 MVLSIRRLADGSIEEATFRKEAESLGKVKHRNLTVLRGYYAGAPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLSFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLDRLSIAASAAVEASSSSTPVGSLGYVSPEAALTGQATKEADVYSFGIVLLEILTGKKPVTFTQDEDIVKWVKKQLQRGQISELLEPGLLEIDPESSEWEEFLLGIKVALLCTAPDPLDRPSMPDIVFMLEGCRVGPEIPSSADPTTLPSPA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211564g00007 274 ProSiteProfiles Protein kinase domain profile. 1 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211564g00007 274 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 54 260 - -
Stsc211564g00007 274 Gene3D Phosphorylase Kinase; domain 1 1 53 - -
Stsc211564g00007 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 98 110 IPR008271 GO:0004672|GO:0006468
Stsc211564g00007 274 SUPERFAMILY Protein kinase-like (PK-like) 13 263 IPR011009 -
Stsc211564g00007 274 Gene3D Transferase(Phosphotransferase) domain 1 54 260 - -
Stsc211564g00007 274 Pfam Protein tyrosine and serine/threonine kinase 14 199 IPR001245 GO:0004672|GO:0006468
Stsc211564g00007 274 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 14 255 - -
Stsc211564g00007 274 SMART serkin_6 2 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211564g00007 Stsc-Chr211564 40424 41317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211564g00007 1 274 Receptor kinase-like Gene Family AT4G36180 78.182 2.20e-147 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Stsc211564g00007 PK_Tyr_Ser-Thr 1.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211564g00007 - - jre:108991311 491.115