Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211563g00004 ATGGCTGATGGTGCTGGTGATGATTTGTATCAAGAGCTATGGAGGTTGTGTGCAGGGCCATTGATGGATGTTCCTTGTGTTCAAGACAAAGTTTTCTATTTTCCTCAAGGCCACATTGAATTGTTGCCAGAACCTACAGAACAAGAATTGAGGCAGATGATGGATGAGAAATCTCCGAAATATGATCTTCCGTCGAAGATTTTGTGCCGAGTCATCGATGTTCAGTGTCTGGCCGAGATGGAGACCGACGAGGTTTATGCTCGAATCACTTTGCAGCCATCTTCAGATAATGAGCCTCTCGATCCTAATCCGATTTGTTCCGAGAAGCCGAAACAGAAGTTTTACTCATTTATTAAGACTCTGAGTACCTCAGATACTAGCACACATGGAGGATTTTCGGTTCTTCGGAAGCATGCTAACGAATGCTTGCCTCAATTGGACATGACAATGGAAAATCCTACTCAGGAGTTGGTAGCAAAGGATATTCATGGCGTCGAATGGAAGTTTAAGCACATATACAGAGGACATCCGAAGAGGCACCTGCTTACAACTGGCTGGAGCGCGTTCGTCGCGGCCAAGAAATTGGTTGCCGGAGATTCCTTTGTTTTTCTAAGGGGAGAGAATGGACAACTGAGAGTAGGCGTTAGGCGTCTGAATCCGCCGCAGAGTCCTACATCTTCGTCCGTGGTGTCAACACAAAACATGCGGCTCGGAGTGATTGTCACTGCAAGCCATTCTGTTATGACCAACACCATGTTTGTGGTTTATTACAAGCCAAGGACTAGTCAGTTCATTGTTGGTTTAAACAAATATGTCGAGGCGATGAACAATGAATTCAAAATCGGCACGCGATTCAGGATGAGACACGAGGGAGAAGATCCACTTGACAAAAGGTTTTGTGGTACTATCGTTGGAGTTGGAGATGAATCTCCAGAATGGCCAGATTCTCATTGGCGATCGTTGAAGGTTCAATGGGATGAACCAGCCACAATGCAAAGACCAGATAGAGTTTCATGTTGGGAGATTGAACCTCTCATTACTCCGGCTCTGAATACGGTTCAACCAACCGCGAAGGGGAAAAGATCAAGGCATGCTGAAGCTTCATCTTCTGGTAGCAGAGAAAGCCAAGTATTGTACTCTCAAAGGCAAAAAGACATAAATACCACCTCATTTGAAGTAGCTACAATGTGGCAGCCACCACATTTGAATGGCAATGGCAATTCTTCTCAACACCCCGGAAAAAACAAAGCCGTCGTCCGGGCGGGTCCATCGGCGAAACCAGGCGAAGCCCTGGCACCGGACCACAACGAAGACGGGAAGAAGCCGGGTAATGGCATGGACTGCTGGTTGTTTGGGGTGAATTTGACTAGCAGCTATAGTAATGTTGTTACCCCTTTGGAGAAAGAACTTAGGTGTGAAGCTTCAACAATCCTTGATTGTGGTCCCAAAGAATCTATTATTGTTGGTGCATGTGAGACTGAGAGGGTTCAGAGTCTCAATAACCATTCACTGTCCAACAAGCAGGGCCATGTACCATCCATGAGGACTAGGACTAAGGTGAAAATGGAAGGTGTAGCAGTTGGTCGTGCAATTGACTTGAGCACATTAAAGGGCTATGATGAACTGATAGTTGAGCTTGAGAAAATGTTTGACATTGAAGGAGAAATTACATCTCAGAAGAAATGGGCTGTTACTTTCACTGATGAAGAAAATGACCTTATGCTTCTTGGTGATCATCTATGGCAGTGA 1749 0.454 MADGAGDDLYQELWRLCAGPLMDVPCVQDKVFYFPQGHIELLPEPTEQELRQMMDEKSPKYDLPSKILCRVIDVQCLAEMETDEVYARITLQPSSDNEPLDPNPICSEKPKQKFYSFIKTLSTSDTSTHGGFSVLRKHANECLPQLDMTMENPTQELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSAFVAAKKLVAGDSFVFLRGENGQLRVGVRRLNPPQSPTSSSVVSTQNMRLGVIVTASHSVMTNTMFVVYYKPRTSQFIVGLNKYVEAMNNEFKIGTRFRMRHEGEDPLDKRFCGTIVGVGDESPEWPDSHWRSLKVQWDEPATMQRPDRVSCWEIEPLITPALNTVQPTAKGKRSRHAEASSSGSRESQVLYSQRQKDINTTSFEVATMWQPPHLNGNGNSSQHPGKNKAVVRAGPSAKPGEALAPDHNEDGKKPGNGMDCWLFGVNLTSSYSNVVTPLEKELRCEASTILDCGPKESIIVGACETERVQSLNNHSLSNKQGHVPSMRTRTKVKMEGVAVGRAIDLSTLKGYDELIVELEKMFDIEGEITSQKKWAVTFTDEENDLMLLGDHLWQ 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211563g00004 582 SUPERFAMILY DNA-binding pseudobarrel domain 105 240 IPR015300 -
Stsc211563g00004 582 Pfam Auxin response factor 243 322 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc211563g00004 582 MobiDBLite consensus disorder prediction 351 379 - -
Stsc211563g00004 582 FunFam Auxin response factor 278 349 - -
Stsc211563g00004 582 CDD B3_DNA 116 217 IPR003340 GO:0003677
Stsc211563g00004 582 SUPERFAMILY CAD & PB1 domains 509 581 - -
Stsc211563g00004 582 Gene3D - 278 349 - -
Stsc211563g00004 582 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Stsc211563g00004 582 ProSiteProfiles PB1 domain profile. 515 582 IPR000270 GO:0005515
Stsc211563g00004 582 MobiDBLite consensus disorder prediction 401 442 - -
Stsc211563g00004 582 Pfam B3 DNA binding domain 117 217 IPR003340 GO:0003677
Stsc211563g00004 582 Gene3D - 115 218 IPR015300 -
Stsc211563g00004 582 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 582 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc211563g00004 582 SMART B3_2 117 219 IPR003340 GO:0003677
Stsc211563g00004 582 FunFam Auxin response factor 115 219 - -
Stsc211563g00004 582 Pfam AUX/IAA family 513 551 IPR033389 -
Stsc211563g00004 582 Gene3D - 511 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211563g00004 Stsc-Chr211563 49128 53504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211563g00004 4 581 B3 DNA Binding Superfamily AT2G46530 50.685 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc211563g00004 B3 9.9e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211563g00004 K14486 - gmx:100795763 700.664