Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211561g00022 ACCCCATATGCTACCATGCACCAACAAGCAAACTACCAACACTTTTTGAATGGGAAGATGGTGAATAAAAGAAAAGAGAGGGAAGGTGAAGAAGGAGTGGAAGCTAAGAGCAATGAAGAATTGAGCAGTGAGTGGGAGCAGATAAGGGAGGAGGCTGCATCAGTGGCAGCTGCATTACTCGGAGCAAGAAGAGCCAAAAAGCGCTTCATTGGCGTGCGTCAACGTCCTTCAGGGCGATGGGTGGCCGAGATCAAAGACACCATACAGAACATTAGGCTGTGGTTAGGAACCTATGACACGGCTGAAGATGCTGCCAGAGCTTATGATGAGGCTGCTCGCTTGCTTCGCGGTGCTAACACCCGCACAAATTTCTTCCCATCACAAGATCCTGATCCTGTTCCAGCTCTTCCTCCAAAGATCGCGAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAGCATTGCCTCTTCTTGCATGGTTAACACTTCTTTTCCCACTAACCAATGTGAGCAAGAAAAAAAGGCCAAGCCAGAGCCAGCACCAGAGCCAAAACTAGAACCAAAACCAGAACCCCTTTTTTCTAAACAAATAGAAGAACACACATACCACTTAGAAAATTTTCTAGATATTGAGGGAAATGGGGCTGTTGGAGATAATTATGATGGTGCTAGTTATGGTTCTGCTTTCACAAATAGTTGTGACTGTAGTACCATAACTTGTGACTATGGTGGAACTAACAATGTAGCAAGTTGTGACCAAGAGGTTTGTATGGAGAATTTCAAGATGGAGGATGGTTGTGCTAGCAATGTTGATGATGGAAGAAACAATCAAATTGTTAGGCCTGATGGAGAATTTGAAGACTACAATGCTGATTTCATTGACTTCCACTTTTTGGATACTGTTGGATCATTGGATTGCTCTTCTTCTCCATTTGAGATAGCCGAGGAAATGGTGGGGCCAATGGTGGAAGAGAATTATGATGTGGATGATTCACCATTGCTTAGGATGAAGTATGAAAGAAAATTCTCAGCATGCCTTTATACATTCATTGGTGTTGGTGAGTGTTTGAGGCTGCAAGATGGACCTGAATAG 1089 0.4389 TPYATMHQQANYQHFLNGKMVNKRKEREGEEGVEAKSNEELSSEWEQIREEAASVAAALLGARRAKKRFIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFPSQDPDPVPALPPKIAKLLLLRLKARSIASSCMVNTSFPTNQCEQEKKAKPEPAPEPKLEPKPEPLFSKQIEEHTYHLENFLDIEGNGAVGDNYDGASYGSAFTNSCDCSTITCDYGGTNNVASCDQEVCMENFKMEDGCASNVDDGRNNQIVRPDGEFEDYNADFIDFHFLDTVGSLDCSSSPFEIAEEMVGPMVEENYDVDDSPLLRMKYERKFSACLYTFIGVGECLRLQDGPE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211561g00022 362 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Stsc211561g00022 362 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Stsc211561g00022 362 CDD AP2 67 124 IPR001471 GO:0003700|GO:0006355
Stsc211561g00022 362 MobiDBLite consensus disorder prediction 166 187 - -
Stsc211561g00022 362 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Stsc211561g00022 362 MobiDBLite consensus disorder prediction 170 187 - -
Stsc211561g00022 362 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Stsc211561g00022 362 Pfam AP2 domain 68 117 IPR001471 GO:0003700|GO:0006355
Stsc211561g00022 362 FunFam ethylene-responsive transcription factor RAP2-11 67 126 - -
Stsc211561g00022 362 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 43 245 - -
Stsc211561g00022 362 SUPERFAMILY DNA-binding domain 68 125 IPR016177 GO:0003677
Stsc211561g00022 362 Gene3D AP2/ERF domain 67 126 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211561g00022 Stsc-Chr211561 104921 106037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211561g00022 66 127 AP2-EREBP Transcription Factor Family AT5G19790 75.385 1.33e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211561g00022 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211561g00022 K09286 - gmx:100793940 281.952