LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211561g00022	ACCCCATATGCTACCATGCACCAACAAGCAAACTACCAACACTTTTTGAATGGGAAGATGGTGAATAAAAGAAAAGAGAGGGAAGGTGAAGAAGGAGTGGAAGCTAAGAGCAATGAAGAATTGAGCAGTGAGTGGGAGCAGATAAGGGAGGAGGCTGCATCAGTGGCAGCTGCATTACTCGGAGCAAGAAGAGCCAAAAAGCGCTTCATTGGCGTGCGTCAACGTCCTTCAGGGCGATGGGTGGCCGAGATCAAAGACACCATACAGAACATTAGGCTGTGGTTAGGAACCTATGACACGGCTGAAGATGCTGCCAGAGCTTATGATGAGGCTGCTCGCTTGCTTCGCGGTGCTAACACCCGCACAAATTTCTTCCCATCACAAGATCCTGATCCTGTTCCAGCTCTTCCTCCAAAGATCGCGAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAGCATTGCCTCTTCTTGCATGGTTAACACTTCTTTTCCCACTAACCAATGTGAGCAAGAAAAAAAGGCCAAGCCAGAGCCAGCACCAGAGCCAAAACTAGAACCAAAACCAGAACCCCTTTTTTCTAAACAAATAGAAGAACACACATACCACTTAGAAAATTTTCTAGATATTGAGGGAAATGGGGCTGTTGGAGATAATTATGATGGTGCTAGTTATGGTTCTGCTTTCACAAATAGTTGTGACTGTAGTACCATAACTTGTGACTATGGTGGAACTAACAATGTAGCAAGTTGTGACCAAGAGGTTTGTATGGAGAATTTCAAGATGGAGGATGGTTGTGCTAGCAATGTTGATGATGGAAGAAACAATCAAATTGTTAGGCCTGATGGAGAATTTGAAGACTACAATGCTGATTTCATTGACTTCCACTTTTTGGATACTGTTGGATCATTGGATTGCTCTTCTTCTCCATTTGAGATAGCCGAGGAAATGGTGGGGCCAATGGTGGAAGAGAATTATGATGTGGATGATTCACCATTGCTTAGGATGAAGTATGAAAGAAAATTCTCAGCATGCCTTTATACATTCATTGGTGTTGGTGAGTGTTTGAGGCTGCAAGATGGACCTGAATAG	1089	0.4389	TPYATMHQQANYQHFLNGKMVNKRKEREGEEGVEAKSNEELSSEWEQIREEAASVAAALLGARRAKKRFIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFPSQDPDPVPALPPKIAKLLLLRLKARSIASSCMVNTSFPTNQCEQEKKAKPEPAPEPKLEPKPEPLFSKQIEEHTYHLENFLDIEGNGAVGDNYDGASYGSAFTNSCDCSTITCDYGGTNNVASCDQEVCMENFKMEDGCASNVDDGRNNQIVRPDGEFEDYNADFIDFHFLDTVGSLDCSSSPFEIAEEMVGPMVEENYDVDDSPLLRMKYERKFSACLYTFIGVGECLRLQDGPE	362

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc211561g00022	362	PRINTS	Ethylene responsive element binding protein signature	69	80	IPR001471	GO:0003700\|GO:0006355
Stsc211561g00022	362	PRINTS	Ethylene responsive element binding protein signature	91	107	IPR001471	GO:0003700\|GO:0006355
Stsc211561g00022	362	CDD	AP2	67	124	IPR001471	GO:0003700\|GO:0006355
Stsc211561g00022	362	MobiDBLite	consensus disorder prediction	166	187	-	-
Stsc211561g00022	362	ProSiteProfiles	AP2/ERF domain profile.	68	125	IPR001471	GO:0003700\|GO:0006355
Stsc211561g00022	362	MobiDBLite	consensus disorder prediction	170	187	-	-
Stsc211561g00022	362	SMART	rav1_2	68	131	IPR001471	GO:0003700\|GO:0006355
Stsc211561g00022	362	Pfam	AP2 domain	68	117	IPR001471	GO:0003700\|GO:0006355
Stsc211561g00022	362	FunFam	ethylene-responsive transcription factor RAP2-11	67	126	-	-
Stsc211561g00022	362	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	43	245	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211561g00022	Stsc-Chr211561	104921	106037	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211561g00022	66	127	AP2-EREBP Transcription Factor Family	AT5G19790	75.385	1.33e-27	107

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Stsc211561g00022		AP2	1.3e-13	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211561g00022	K09286		-	gmx:100793940	281.952

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