Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211561g00005 ATGATGATGATGGAGGAGAGGAAGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCATGTGGCAAGTCTCTTGGAGGTCACATCAGGACCCACATCACTGAAGAAAGAACCACCATGAATGCCTCTTCTAATTCTCCCATTGCTCATGATCTTCTTCTCAAGAAGAAGAGGAAGAGGGATTCACCATGGCCTACTCCTCATCAATCTGCTGCTGCTAACAATAATTATGGCCTTAGGGAGAATCCCAAGAAGACAACAAGGTTTGTGCATATTGATGCTGCTGCTGCCACCACCAACTTGGCACGTGACAAGGAAGAGAGGTTCTGCAAGGAATGTGGGAAAGGCTTTCCATCAATGAAAGCTCTTTGTGGCCACATGGCTTGTCACTCTGACAAAGACAAAGACAGAGACAAATTGGTGGTTATGCCTATGGATGCTGATGCTGCTGATGATGATGATGATGATGGATATGGTGATAATATTAATAATAGCCAATCTGATGCTGAGAGTTCTGGTGCTGCTGCTTCATTGCTTCCAAGGAGGAGATCCAAGAGGATGATGAGGTTCAAGAATCTCAGACCCTTTTGCTCTTCTTCTCCTTCTGCTTCTCTCTCTGAGGTGGAGCAGCAGCAGGAGGAGCAAGAAGAGGTTGCTAGGATGCTCATGATGCTCTCTAGAGATTCCGGCCGGAAGGGTCGATTACCTTCTCTTACCGAGTCTTCTGATAACAATTCTGTTGTTCTTGACACCAATAAGGTTGCTGCTGTTGGGTCTCTGAGGAGTGGCCTCAAGAACAAAATGGTTGATTCTTCAGATGTCTCAATGGATGAATTCAAAGGGTGGAAGAATGTTAAAGATAAAGACAAAGAGAGAAGAAGCAAATACAGTAGTAGTGTTGCTTTTGCTGCTACAGTTAAGGATTTGGAATATGAAACAACAGTAACTACTACAACTACTACAAGGAAGAAGTTTGATTTCAGAAAGAGAGCAAACTATGATTCTCTCATTCACAGTTCAACTGAAGTTCCTACCAAGAATAATGGAAAAACTGGTTTCTCCAATGATGAGTATGATGATTGTTCTTATGATTCAACAGAATATGATGATGTTGATGAAGATGAAGAGAGTGATGAGAACAGCACTGATACTGATTCATTTCCTGCTCCAAAGGCTCNNNNNNNNNNCTAA 1191 0.424 MMMMEERKKFVCKYCSKRFPCGKSLGGHIRTHITEERTTMNASSNSPIAHDLLLKKKRKRDSPWPTPHQSAAANNNYGLRENPKKTTRFVHIDAAAATTNLARDKEERFCKECGKGFPSMKALCGHMACHSDKDKDRDKLVVMPMDADAADDDDDDGYGDNINNSQSDAESSGAAASLLPRRRSKRMMRFKNLRPFCSSSPSASLSEVEQQQEEQEEVARMLMMLSRDSGRKGRLPSLTESSDNNSVVLDTNKVAAVGSLRSGLKNKMVDSSDVSMDEFKGWKNVKDKDKERRSKYSSSVAFAATVKDLEYETTVTTTTTTRKKFDFRKRANYDSLIHSSTEVPTKNNGKTGFSNDEYDDCSYDSTEYDDVDEDEESDENSTDTDSFPAPKAXXXX 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211561g00005 396 MobiDBLite consensus disorder prediction 39 81 - -
Stsc211561g00005 396 MobiDBLite consensus disorder prediction 360 382 - -
Stsc211561g00005 396 MobiDBLite consensus disorder prediction 144 181 - -
Stsc211561g00005 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Stsc211561g00005 396 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 353 - -
Stsc211561g00005 396 MobiDBLite consensus disorder prediction 337 359 - -
Stsc211561g00005 396 SMART c2h2final6 108 130 IPR013087 -
Stsc211561g00005 396 SMART c2h2final6 10 32 IPR013087 -
Stsc211561g00005 396 MobiDBLite consensus disorder prediction 337 396 - -
Stsc211561g00005 396 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Stsc211561g00005 396 SUPERFAMILY beta-beta-alpha zinc fingers 7 37 IPR036236 -
Stsc211561g00005 396 ProSitePatterns Zinc finger C2H2 type domain signature. 12 32 IPR013087 -
Stsc211561g00005 396 MobiDBLite consensus disorder prediction 67 81 - -
Stsc211561g00005 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Stsc211561g00005 396 Pfam C2H2-type zinc finger 10 32 - -
Stsc211561g00005 396 Pfam C2H2-type zinc finger 110 132 - -
Stsc211561g00005 396 Gene3D Classic Zinc Finger 2 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211561g00005 Stsc-Chr211561 23914 25632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211561g00005 1 251 C2H2 Transcription Factor Family AT1G26610 42.857 6.13e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211561g00005 zf-C2H2_6 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211561g00005 - - aip:107634772 579.326