Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211557g00010 ATGGCATCTTCTTCTGGTAGCTTAGACACTAGTTCTGCTTCAAATTCTTATACCAACAACAATAACTTCACTTTCTCAACACACCCATTCATGACCACTTCTTTCTCTGAACTCTTAGCTTCTTCTAATTCTGCTGAAGACAAGCCTCGTGCTTCTTCTGGTGTTCCTAAGTTCAAGTCTACACCACCACCATCTCTCCCTCTCTCTCCACCACCCATCTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGTTTGAGCCCTGCTGAACTCCTTGATTCCCCTGTTCTTCTTAATCCTTCTAACATTTTGCCATCTCCAACAACCGGGGCATTTGTTGCACAGAGCTACAATAATTGGAAGAACAATAACAACAACAACAACAACAACAATTCTGGTGGGAACCAACAACAACATGTCATCATCAAAGAGGAAGAAGGAAAGAACAACAACAACACCAACACCTTCTCAAACTTCTCTTTCCAAACCCAACCATCCATGTTTCAATCCTCATCAACTGTCACAACTCAAACACAAGTGCAACAGCAGCAGGCCTGGGGATTTCAAGAATCCAACAACAACAAACAGGAAAATTTCTTATCATCAAAAAGTATGATGAAAACTGAGAACAACAATGGGTTCCAATCAGATTACAACAACAACAGCAGCAACAACTACCAGCCACAATCTCAGACCCTAAGCAGAAGATCAGATGATGGTTACAATTGGAGAAAATATGGTCAGAAACAAGTGAAAGGGAGTGAGAATCCAAGAAGTTACTATAAATGCACGTTCCCAAATTGCCCTACAAAGAAGAAAGTTGAGAGGTCCTTGGATGGACAAATTACTGAGATTGTTTATAAGGGTACTCATAATCACCCTAAGCCTCAGAACACTAGGAGAAACTCTTCATCTTCTTCTTCTGCTTCTGCTGCTTTTGCAATTGCTCCCTCCAATCAAATCAACAACTCAGAGGTTCCTGATCATCAATCTTATGCCACACATGGTAGTGGACAAATGGATTCTGTTGCCACCCCTGAGAACTCCTCAATTTCAGTTGGAGATGATGATTTTGAGCAAAGCTCTCTGAGGTGTAAATCAGGTGGAGATGATTTTGATGATGATGAACCTGATGCCAAAAGATGGAAAATTGAAGGGGAAAATGAGGGAATATCAGGAGGAGCTGGAAGTAGAACAGTGAGAGAACCAAGGGTTGTGGTTCAGACAACAAGTGACATAGATATCCTTGATGATGGATACAGATGGAGGAAGTATGGCCAGAAAGTAGTTAAGGGCAATCCAAATCCAAGGAGCTATTACAAGTGCACACACCCAGGTTGTCCAGTGAGGAAGCATGTAGAGAGAGCCTCACATGACCTAAGGGCAGTGATAACAACCTATGAAGGCAAACACAACCATGATGTCCCCGCTGCACGCGGCAGCGGCGGAAGCCATGCCTCTGTCAACAGACCAATGCCAAACAACAACAATGCAAGCATTGCAATTAGGCCTTTACCATCAATGACACACCAAAACAACAACAACACTAACAACACTACTTCCCTTCAACAAGGGCAATCACCTTTCACACTTGAAATGCTTCAGAACCCTTCAAGCTATGGATTCTCATCTGGGTTTGGGAATCCAATGGGTTCTTACATGCCTCAGCAGCAGCAACAACAACAATCTGACAATGTGTTTTCTTCCAGAGCCAAGGAGGAACCTAGGGATGACATGTTCCTTGAATCTTTGCTATGCTGA 1758 0.4289 MASSSGSLDTSSASNSYTNNNNFTFSTHPFMTTSFSELLASSNSAEDKPRASSGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNPSNILPSPTTGAFVAQSYNNWKNNNNNNNNNNSGGNQQQHVIIKEEEGKNNNNTNTFSNFSFQTQPSMFQSSSTVTTQTQVQQQQAWGFQESNNNKQENFLSSKSMMKTENNNGFQSDYNNNSSNNYQPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSSSSSSASAAFAIAPSNQINNSEVPDHQSYATHGSGQMDSVATPENSSISVGDDDFEQSSLRCKSGGDDFDDDEPDAKRWKIEGENEGISGGAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGGSHASVNRPMPNNNNASIAIRPLPSMTHQNNNNTNNTTSLQQGQSPFTLEMLQNPSSYGFSSGFGNPMGSYMPQQQQQQQSDNVFSSRAKEEPRDDMFLESLLC 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211557g00010 585 Gene3D WRKY domain 221 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211557g00010 585 SUPERFAMILY WRKY DNA-binding domain 235 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211557g00010 585 MobiDBLite consensus disorder prediction 39 71 - -
Stsc211557g00010 585 FunFam WRKY transcription factor 33 402 468 - -
Stsc211557g00010 585 ProSiteProfiles WRKY domain profile. 237 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211557g00010 585 SMART WRKY_cls 236 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211557g00010 585 SMART WRKY_cls 415 474 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211557g00010 585 MobiDBLite consensus disorder prediction 471 490 - -
Stsc211557g00010 585 ProSiteProfiles WRKY domain profile. 410 475 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211557g00010 585 MobiDBLite consensus disorder prediction 532 576 - -
Stsc211557g00010 585 MobiDBLite consensus disorder prediction 206 240 - -
Stsc211557g00010 585 Pfam WRKY DNA -binding domain 416 472 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211557g00010 585 Pfam WRKY DNA -binding domain 237 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211557g00010 585 Gene3D WRKY domain 402 468 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211557g00010 585 MobiDBLite consensus disorder prediction 286 377 - -
Stsc211557g00010 585 MobiDBLite consensus disorder prediction 532 567 - -
Stsc211557g00010 585 MobiDBLite consensus disorder prediction 206 236 - -
Stsc211557g00010 585 MobiDBLite consensus disorder prediction 291 356 - -
Stsc211557g00010 585 SUPERFAMILY WRKY DNA-binding domain 407 475 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211557g00010 585 MobiDBLite consensus disorder prediction 358 377 - -
Stsc211557g00010 585 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 91 518 IPR044810 GO:0003700
Stsc211557g00010 585 FunFam WRKY transcription factor 225 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211557g00010 Stsc-Chr211557 80772 84197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211557g00010 219 584 WRKY Transcription Factor Family AT2G38470 57.825 5.28e-114 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc211557g00010 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211557g00010 K13424 - gmx:100127393 756.518