Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211556g00021 ATGGGATGCGTCACCTCCAAGCACGCTGTCTCCGTCACGCCTGCCATCGACCACTCCGGTGCTTTCCGCCCCAATGCCGCTCATTCCGCACGCAAAACTCCCCACTCCTCCGACACCACAAAAACGACTGACTCGTCCCTTCTCACTCGGACTGAGTTAAGCGAGTCAGCCAGGGCTAGTTCAACTGCCGCTGAATCCCTCAGCTTTAGGCTCGGGAACCTCCACAAGTACGTCCAGGGGGACCATGTTGCCGCCGGTTGGCCTGCCTGGCTCAGCGCCGTCGCCGGTGAAGCCATCCACGGCTGGGTTCCCCTCCGCGCCGACGCATTCGAGAAGCTTGAGAAGATTGGGCAGGGTACTTATAGCAGCGTGTTCAGGGCGAGGGAGCTTGAGACCGGGAAGATAGTGGCCTTAAAGAAGGTCCGCTTCGACAATTTCGAGCCTGAGAGTGTTCGGTTTATGGCTCGAGAGATAACCATTCTGAGGAGGCTTGATCATCCCAACATCATAAAGCTGCAGGGCTTGATCACTTCCAGGCTCTCCTGCAGCATATACCTTGTCTTTGACTACATGGAGCACGACATCACGGGCCTCTTGTCCAGTCCTCATGTCAACTTCACCGAACCCCAGATTAAGTGCTACATGAAGCAGTTGTTGTCTGGTCTCGAGCATTGTCATTCCAGGGGTGTGATGCACAGGGATATCAAGGGATCCAATCTTCTTGTCAATAATGAAGGGATACTCAAGGTGGCTGATTTTGGATTGGCAAACTTCTCCAGCTCTGGGTACAGGCATCCACTCACCAGTCGTGTTGTCACTTTGTGGTATCGACCACCGGAGCTTTTGCTGGGTTCAACGGATTATGGCCCTTCTGTTGATCTCTGGAGTGTTGGCTGCGTTTTTGCAGAGCTACTTGTTGGCAAGCCTATACTTCAGGGCAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCTCATGCAACTTTGTTTAAGCCACAGCAAGCATATGATAGCTGCCTCCGACAGTCCTTTAAAGATTTGCCTTCATCCAGTGTAAATCTGCTGCAAACTCTTCTTTCTGTTGAACCATACAAGCGTGGGACTGCCACATCTGCTCTCTCATCAGAGTATTTCAAAACAAAACCTCATGCATGTGAGCCATCAAGCTTGCCAACATACCCGCCCAGTAAGGAAATTGATGCGAAACACAGAGAGGAGTCAAGGAAAAAGATTACTGGAAGAGCTCGTGGAACTGAAAAAAGAAAACCATCAAGAAAGGCCCTTGGATTCAATAAACTAACTCCAGCGGAGGATTTGGCAACTCAAACTCAAGCTTCCCAAAAGGTCAATGGTAGATCTGTTTCCATCCTTCAAGAACAAAAGGTTAACACAGGCGAGGAGGAACAAAAGCCATCTAGTAGTAAACGTGAAGATGCTTCCCATACGAAGAATGCATCTAAAGAAGATATTCCCTTTTCCGGGCCATTACAAGTTTCATCATCAAGTGGCTTTGCATGGGCTAAAAGTCGTAAAGATGACACTTCAATTCGATCCCACTGTAGAACTATTTCGAGAGGACATATTTTTAACCAGTCAGAAACTTCTACACTAAAATCAAGGAATAATTTGGATAACAGAAACCAGGAAAGTAAGGAGTCCTCTGGGAGGCGTACCAACTCTAGGGGCAGCGACCTACTCGACTTCTCTAAGATTTCAATGCAGAATCCGTGGAATAAGTTTGATCGGCCAGATTCATTTGATGCTTCCGATGAGTATCACTCGCAAGAACTATCTATGGCACTTTATCGTAGAGAAGATTCAGCATCCAAGAGAAGTAACCTGAGTTTTCAAGATCAAGGAGAGAAGGTTGAATATTCCGGACCCCTTCTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAGACATGAGCGTCATATCCGACGCACTGTTAGGAAATCATGGTTTCAAAGAGCTAAGAAGCATGGGAAGTAG 2043 0.4782 MGCVTSKHAVSVTPAIDHSGAFRPNAAHSARKTPHSSDTTKTTDSSLLTRTELSESARASSTAAESLSFRLGNLHKYVQGDHVAAGWPAWLSAVAGEAIHGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREITILRRLDHPNIIKLQGLITSRLSCSIYLVFDYMEHDITGLLSSPHVNFTEPQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSSSGYRHPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQAYDSCLRQSFKDLPSSSVNLLQTLLSVEPYKRGTATSALSSEYFKTKPHACEPSSLPTYPPSKEIDAKHREESRKKITGRARGTEKRKPSRKALGFNKLTPAEDLATQTQASQKVNGRSVSILQEQKVNTGEEEQKPSSSKREDASHTKNASKEDIPFSGPLQVSSSSGFAWAKSRKDDTSIRSHCRTISRGHIFNQSETSTLKSRNNLDNRNQESKESSGRRTNSRGSDLLDFSKISMQNPWNKFDRPDSFDASDEYHSQELSMALYRREDSASKRSNLSFQDQGEKVEYSGPLLSQMHTVDELLERHERHIRRTVRKSWFQRAKKHGK 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211556g00021 680 PANTHER CELL DIVISION PROTEIN KINASE 108 398 - -
Stsc211556g00021 680 FunFam probable serine/threonine-protein kinase At1g54610 193 434 - -
Stsc211556g00021 680 MobiDBLite consensus disorder prediction 543 584 - -
Stsc211556g00021 680 MobiDBLite consensus disorder prediction 543 559 - -
Stsc211556g00021 680 Gene3D Transferase(Phosphotransferase) domain 1 193 432 - -
Stsc211556g00021 680 SMART serkin_6 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211556g00021 680 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211556g00021 680 FunFam probable serine/threonine-protein kinase At1g54610 97 192 - -
Stsc211556g00021 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Stsc211556g00021 680 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Stsc211556g00021 680 MobiDBLite consensus disorder prediction 560 574 - -
Stsc211556g00021 680 MobiDBLite consensus disorder prediction 15 47 - -
Stsc211556g00021 680 MobiDBLite consensus disorder prediction 452 478 - -
Stsc211556g00021 680 MobiDBLite consensus disorder prediction 413 429 - -
Stsc211556g00021 680 CDD STKc_CDK9_like 110 394 - -
Stsc211556g00021 680 SUPERFAMILY Protein kinase-like (PK-like) 103 399 IPR011009 -
Stsc211556g00021 680 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Stsc211556g00021 680 MobiDBLite consensus disorder prediction 479 501 - -
Stsc211556g00021 680 MobiDBLite consensus disorder prediction 398 517 - -
Stsc211556g00021 680 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211556g00021 Stsc-Chr211556 92032 96818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211556g00021 102 426 Core Cell Cycle Gene Families AT5G10270 50.147 3.57e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc211556g00021 Pkinase 6.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211556g00021 - - gmx:100803328 1132.86