Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211556g00020 ATGGAGGAGGTTGTTTTTGGTGTGCAGATTAAGTGCTACATGAAGCAGTTGTTGTCTGGTCTCGAGCATTGTCATTCCAGGGGTGTGATGCACAGGGATATCAAGGGATCCAATCTTCTTGTCAATAATGAAGGGATACTCAAGGTGGCTGATTTTGGATTGGCAAACTTCTCCAGCTCTGGGTACAGGCATCCACTCACCAGTCGTGTTGTCACTTTGTGGTATCGACCACCGGAGCTTTTGCTGGGTTCAACGGATTATGGCCCTTCTGTTGATCTCTGGAGTGTTGGCTGCGTTTTTGCAGAGCTACTTGTTGGCAAGCCTATACTTCAGGGCAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCTCATGCAACTTTGTTTAAGCCACAGCAAGCATATGATAGCTGCCTCCGACAGTCCTTTAAAGATTTGCCTTCATCCAGTGTAAATCTGCTGCAAACTCTTCTTTCTGTTGAACCATACAAGCGTGGGACTGCCACATCTGCTCTCTCATCAGAGTATTTCAAAACAAAACCTCATGCATGTGAGCCATCAAGCTTGCCAACATACCCGCCCAGTAAGGAAATTGATGCGAAACACAGAGAGGAGTCAAGGAAAAAGATTACTGGAAGAGCTCGTGGAACTGAAAAAAGAAAACCATCAAGAAAGGCCCTTGGATTCAATAAACTAACTCCAGCGGAGGATTTGGCAACTCAAACTCAAGCTTCCCAAAAGGTCAATGGTAGATCTGTTTCCATCCTTCAAGAACAAAAGGTTAACACAGGCGAGGAGGAACAAAAGCCATCTAGTAGTAAACGTGAAGATGCTTCCCATACGAAGAATGCATCTAAAGAAGATATTCCCTTTTCCGGGCCATTACAAGTTTCATCATCAAGTGGCTTTGCATGGGCTAAAAGTCGTAAAGATGACACTTCAATTCGATCCCACTGTAGAACTATTTCGAGAGGACATATTTTTAACCAGTCAGAAACTTCTACACTAAAATCAAGGAATAATTTGGATAACAGAAACCAGGAAAGTAAGGAGTCCTCTGGGAGGCGTACCAACTCTAGGGGCAGCGACCTACTCGACTTCTCTAAGATTTCAATGCAGAATCCGTGGAATAAGTTTGATCGGCCAGATTCATTTGATGCTTCCGATGAGTATCACTCGCAAGAACTATCTATGGCACTTTATCGTAGAGAAGATTCAGCATCCAAGAGAAGTAACCTGAGTTTTCAAGATCAAGGAGAGAAGGTTGAATATTCCGGACCCCTTCTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAGACATGAGCGTCATATCCGACGCACTGTTAGGAAATCATGGTTTCAAAGAGCTAAGAAGCATGGGAAGTAG 1440 0.4375 MEEVVFGVQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSSSGYRHPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQAYDSCLRQSFKDLPSSSVNLLQTLLSVEPYKRGTATSALSSEYFKTKPHACEPSSLPTYPPSKEIDAKHREESRKKITGRARGTEKRKPSRKALGFNKLTPAEDLATQTQASQKVNGRSVSILQEQKVNTGEEEQKPSSSKREDASHTKNASKEDIPFSGPLQVSSSSGFAWAKSRKDDTSIRSHCRTISRGHIFNQSETSTLKSRNNLDNRNQESKESSGRRTNSRGSDLLDFSKISMQNPWNKFDRPDSFDASDEYHSQELSMALYRREDSASKRSNLSFQDQGEKVEYSGPLLSQMHTVDELLERHERHIRRTVRKSWFQRAKKHGK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211556g00020 479 Gene3D Transferase(Phosphotransferase) domain 1 8 231 - -
Stsc211556g00020 479 MobiDBLite consensus disorder prediction 197 316 - -
Stsc211556g00020 479 FunFam probable serine/threonine-protein kinase At1g54610 2 233 - -
Stsc211556g00020 479 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211556g00020 479 SMART serkin_6 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211556g00020 479 MobiDBLite consensus disorder prediction 342 383 - -
Stsc211556g00020 479 MobiDBLite consensus disorder prediction 342 358 - -
Stsc211556g00020 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 29 41 IPR008271 GO:0004672|GO:0006468
Stsc211556g00020 479 MobiDBLite consensus disorder prediction 212 228 - -
Stsc211556g00020 479 MobiDBLite consensus disorder prediction 359 373 - -
Stsc211556g00020 479 SUPERFAMILY Protein kinase-like (PK-like) 9 198 IPR011009 -
Stsc211556g00020 479 Pfam Protein kinase domain 9 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211556g00020 479 MobiDBLite consensus disorder prediction 278 300 - -
Stsc211556g00020 479 MobiDBLite consensus disorder prediction 251 277 - -
Stsc211556g00020 479 PANTHER CELL DIVISION PROTEIN KINASE 9 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211556g00020 Stsc-Chr211556 92032 96818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211556g00020 9 225 Core Cell Cycle Gene Families AT5G10270 52.752 4.55e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc211556g00020 Pkinase 3.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211556g00020 - - gmx:100803328 815.453