Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211556g00019 ATGGCTCGAGAGATAACCATTCTGAGGAGGCTTGATCATCCCAACATCATAAAGCTGCAGGGCTTGATCACTTCCAGGCTCTCCTGCAGCATATACCTTGTCTTTGACTACATGGAGCACGACATCACGGGCCTCTTGTCCAGTCCTCATGTCAACTTCACCGAACCCCAGATTAAGTGCTACATGAAGCAGTTGTTGTCTGGTCTCGAGCATTGTCATTCCAGGGGTGTGATGCACAGGGATATCAAGGGATCCAATCTTCTTGTCAATAATGAAGGGATACTCAAGGTGGCTGATTTTGGATTGGCAAACTTCTCCAGCTCTGGGTACAGGCATCCACTCACCAGTCGTGTTGTCACTTTGTGGTATCGACCACCGGAGCTTTTGCTGGGTTCAACGGATTATGGCCCTTCTGTTGATCTCTGGAGTGTTGGCTGCGTTTTTGCAGAGCTACTTGTTGGCAAGCCTATACTTCAGGGCAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCTCATGCAACTTTGTTTAAGCCACAGCAAGCATATGATAGCTGCCTCCGACAGTCCTTTAAAGATTTGCCTTCATCCAGTGTAAATCTGCTGCAAACTCTTCTTTCTGTTGAACCATACAAGCGTGGGACTGCCACATCTGCTCTCTCATCAGAGTATTTCAAAACAAAACCTCATGCATGTGAGCCATCAAGCTTGCCAACATACCCGCCCAGTAAGGAAATTGATGCGAAACACAGAGAGGAGTCAAGGAAAAAGATTACTGGAAGAGCTCGTGGAACTGAAAAAAGAAAACCATCAAGAAAGGCCCTTGGATTCAATAAACTAACTCCAGCGGAGGATTTGGCAACTCAAACTCAAGCTTCCCAAAAGGTCAATGGTAGATCTGTTTCCATCCTTCAAGAACAAAAGGTTAACACAGGCGAGGAGGAACAAAAGCCATCTAGTAGTAAACGTGAAGATGCTTCCCATACGAAGAATGCATCTAAAGAAGATATTCCCTTTTCCGGGCCATTACAAGTTTCATCATCAAGTGGCTTTGCATGGGCTAAAAGTCGTAAAGATGACACTTCAATTCGATCCCACTGTAGAACTATTTCGAGAGGACATATTTTTAACCAGTCAGAAACTTCTACACTAAAATCAAGGAATAATTTGGATAACAGAAACCAGGAAAGTAAGGAGTCCTCTGGGAGGCGTACCAACTCTAGGGGCAGCGACCTACTCGACTTCTCTAAGATTTCAATGCAGAATCCGTGGAATAAGTTTGATCGGCCAGATTCATTTGATGCTTCCGATGAGTATCACTCGCAAGAACTATCTATGGCACTTTATCGTAGAGAAGATTCAGCATCCAAGAGAAGTAACCTGAGTTTTCAAGATCAAGGAGAGAAGGTTGAATATTCCGGACCCCTTCTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAGACATGAGCGTCATATCCGACGCACTGTTAGGAAATCATGGTTTCAAAGAGCTAAGAAGCATGGGAAGTAG 1584 0.4444 MAREITILRRLDHPNIIKLQGLITSRLSCSIYLVFDYMEHDITGLLSSPHVNFTEPQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSSSGYRHPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQAYDSCLRQSFKDLPSSSVNLLQTLLSVEPYKRGTATSALSSEYFKTKPHACEPSSLPTYPPSKEIDAKHREESRKKITGRARGTEKRKPSRKALGFNKLTPAEDLATQTQASQKVNGRSVSILQEQKVNTGEEEQKPSSSKREDASHTKNASKEDIPFSGPLQVSSSSGFAWAKSRKDDTSIRSHCRTISRGHIFNQSETSTLKSRNNLDNRNQESKESSGRRTNSRGSDLLDFSKISMQNPWNKFDRPDSFDASDEYHSQELSMALYRREDSASKRSNLSFQDQGEKVEYSGPLLSQMHTVDELLERHERHIRRTVRKSWFQRAKKHGK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211556g00019 527 MobiDBLite consensus disorder prediction 245 364 - -
Stsc211556g00019 527 Gene3D Phosphorylase Kinase; domain 1 1 37 - -
Stsc211556g00019 527 SUPERFAMILY Protein kinase-like (PK-like) 2 246 IPR011009 -
Stsc211556g00019 527 PANTHER CELL DIVISION PROTEIN KINASE 2 245 - -
Stsc211556g00019 527 Gene3D Transferase(Phosphotransferase) domain 1 40 279 - -
Stsc211556g00019 527 SMART serkin_6 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211556g00019 527 MobiDBLite consensus disorder prediction 390 406 - -
Stsc211556g00019 527 MobiDBLite consensus disorder prediction 390 431 - -
Stsc211556g00019 527 FunFam probable serine/threonine-protein kinase At1g54610 40 281 - -
Stsc211556g00019 527 Pfam Protein kinase domain 2 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211556g00019 527 MobiDBLite consensus disorder prediction 260 276 - -
Stsc211556g00019 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Stsc211556g00019 527 MobiDBLite consensus disorder prediction 407 421 - -
Stsc211556g00019 527 MobiDBLite consensus disorder prediction 299 325 - -
Stsc211556g00019 527 FunFam Putative serine threonine-protein kinase 1 44 - -
Stsc211556g00019 527 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211556g00019 527 MobiDBLite consensus disorder prediction 326 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211556g00019 Stsc-Chr211556 92032 96818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211556g00019 3 273 Core Cell Cycle Gene Families AT5G10270 49.650 2.42e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc211556g00019 Pkinase 1.8e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211556g00019 - - gmx:100803328 915.605