Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211556g00013 ATGGCAGTGGAAATTGCGATCCAGAGAGAGCTGGCACATAGGATGAAGGTGACAGCACCACATTTGAGACCATCAAATTCTAATTCTACTAAGGAGGTTTTTCCTTCACAGTTTACATCACCAAGTCAAGCTTCCAAGTCAATAGCATTACCAGGTTCAACTCCAAGGTTATCTTTGAGTCCAAACCTTTCTGGAACCAAGAGAAAGGAAACATTACCAGTAAGCACTGCTTCTAATCCTCCTCAACAAAATCGCCAACCGTTTCATCGCGATATCAGTCACAAAGCTGAAGCAGATGATAATGTATACTGCAAAATCTGCAACCTATCTTGCTCAAGTCCATTCAATCTCAAGCAGCATTTGATGGGCTACAAGCACAGGGAGAAACTGCTAGAACTCGAATCCGGCAAGAAATCCGGAACAAGTGAGAATAGTAGAAGCTATGAAAGGCATTGGTGTGATATGTGCAAAATTTCATGTATGAATGAAGAGTTGCTGAAGCTTCCTTTCAAGGTAAAAAGCACAAGGCTCAATTGA 537 0.4171 MAVEIAIQRELAHRMKVTAPHLRPSNSNSTKEVFPSQFTSPSQASKSIALPGSTPRLSLSPNLSGTKRKETLPVSTASNPPQQNRQPFHRDISHKAEADDNVYCKICNLSCSSPFNLKQHLMGYKHREKLLELESGKKSGTSENSRSYERHWCDMCKISCMNEELLKLPFKVKSTRLN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211556g00013 178 Pfam Zinc-finger of C2H2 type 103 126 - -
Stsc211556g00013 178 MobiDBLite consensus disorder prediction 21 87 - -
Stsc211556g00013 178 MobiDBLite consensus disorder prediction 17 87 - -
Stsc211556g00013 178 SUPERFAMILY beta-beta-alpha zinc fingers 88 132 IPR036236 -
Stsc211556g00013 178 Gene3D Classic Zinc Finger 91 144 - -
Stsc211556g00013 178 SMART ZnF_U1_5 99 133 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211556g00013 Stsc-Chr211556 60087 61883 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211556g00013 zf-met 3.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211556g00013 - - aip:107619886 226.483