Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211556g00005 ATGCCTCTGACAGAGCAACAGAGGCAACAAATCGAAGCAAATCGCCAAGCAGCTCTCGCCAAACGCAAAGCATTTCTCGAATCCCAACAACAACAACAGCAACACCAACTAATTTTCAAATGCCAGAAGCTTAACAACAACCCCAATTCTTTTCACACATCCAAACAAGCCCTTATTCCAAAGTTCCTTGCCCGCCTCGAAATATGCTCACCGGACTCCTTCTCCGTCACGCCTATCCCCTCCGACAAACACACCTTCTCCGCCCTCAACACCATCCTCTCCGACCACCTCCCCTCTCACTTCACGCAGATCTCCACCTCCGTTCCCGATGCCTCCGTCTACAACCTCTCCGACTACCTCCTCGTCCTCAAACGCCTCAAGGCTGCGTCGCACCAGATTTCTGACGTCGAGGAAATTCCATGGAACACACTCAAAGCCGTTGAGACCATGATGGTGGCGTCTGGTGGTGGCGGCACCTGGAAGCCGGCGAGGCCCGAGCATCTCACCGACGAACAGGTGGACGACCTCATCGCGAAGCTTCCGAAGTGTTTGGTGGATGCTCTGATGCCGTTTCAGGTGGATGGGATTAGGTTTGGACTCAGAAGGGGTGGAAGGTGCCTCATTGCTGATGACATGGGACTTGGAAAGACCCTCCAGGCGATTGCTATTGCGGGATGTTTCATGCATGAAGGTCCCATACTTGTGGTTTGCCCTGCTGTTTTGCGTTTTTCGTGGGCAGAAGAATTGGAACGTTGGCTTCCTAGCTGTTTGCCTGCTGATATTCATCTTGTCTTTGGCCATCAAGATAACCCTATACATTTAACAAGATTCCCTAGAGTTGTGGTTATTTCTTATACCATGCTCAGTCGTCTAAAGAAGAACATGATTGAGCGTGACTGGGCTCTCCTGATTATTGATGAATCTCACCATGTGCGATGCACGAAGAAAGCCAAAGAGTCAGGGGAGACACTAGCTGTTCTTGATGTGGCAACAAAAGTCAAGCGTATAGTTCTGCTATCAGGGACTCCCTCGCTATCAAGGCCTGATTTGTTGGGGACAAATAAACGTGAGTTTGCAAAAACTTATTGTGACATGAAACTTGTCATGGGCATCCAAGGAAAAGTGTTTGCGATAAGGCGTTTGAAGGAACATGTGATGCTACAGTTACCTCCAAAGAGGCGGCAAATTATAAGACTAAAGTTGAACAGATCAGATATAGTTGCTGCAAAAAAAGCAGTTGGGGCATTGATGATTGATGACCCTGAACGTGAAAATGAAGACATGCCTCTAGAAAATTCAGATGAACTTGATGGGGACCTTTCTGTCCAAGAACTTGGAATCGCAAAGCTTTCTGGGTTTCGTGAATGGCTTTCCCTCCATCCACTGATAGCAGGATCAGAGTGTTCTAAAAAGATGATAATTTTTGCTCATCACATCAAAGTTCTTGATGGAATACAGGAGTTTATATGTGAGAAAGGTGTAGGTTTTGTGCGGATTGATGGAAGTACTCTTCCAAGAGATAGGCAATCAGCAGTGGTATCATTTCGATCATCATCGGAGGTTAAAATTGCAATAATAGGTATTTTGGCAGCAGGTTTTGGACTTGACTTCTCAACAGCACAAGATGTTGTGTTCTTGGAGCTACCTCAGTGCCCAACTATAATGCTTCAGGCTGAGGATAGAGCTCATCGACGGGGGCAAACAAATGCAGTTAATGTATACATATTCTGTGGAAAGGATACCTCGGATGAGTTGCGTTGGAAAAATTTGAATACAAGTTTGCACCGTATTTCAAAAACAACAGATGGAAAATATGATGCAATGAAGGAGATAGTGATTGATAATGTTTCTGACTTAGGGACATCTTTCAAAACTGATACTTCTGATGAGCAATCTGCATGTGAAGAGGAATTAGTTGAAACACTGTTGGATAAGCAACCGTCCCCAGTAAATTCAAATGAATCTGAAGTAAAGCAAGATGATAAATCTGTTGAGCAGGCTTCTTTTGACAATAACTCAATTTGTACTGCTAATATTACGGTGCAGGACAAGAAACCAATTCCAACAGCAGAAGCAGATGACATGCAGCCTGATCATCAACTTGAAACAGATAGACATGGGTCTAATGAAGCTGATTGTCTGCGTTTTGAGGTAACATTTATTGTCATAGTTGTTGATTGA 2181 0.448 MPLTEQQRQQIEANRQAALAKRKAFLESQQQQQQHQLIFKCQKLNNNPNSFHTSKQALIPKFLARLEICSPDSFSVTPIPSDKHTFSALNTILSDHLPSHFTQISTSVPDASVYNLSDYLLVLKRLKAASHQISDVEEIPWNTLKAVETMMVASGGGGTWKPARPEHLTDEQVDDLIAKLPKCLVDALMPFQVDGIRFGLRRGGRCLIADDMGLGKTLQAIAIAGCFMHEGPILVVCPAVLRFSWAEELERWLPSCLPADIHLVFGHQDNPIHLTRFPRVVVISYTMLSRLKKNMIERDWALLIIDESHHVRCTKKAKESGETLAVLDVATKVKRIVLLSGTPSLSRPDLLGTNKREFAKTYCDMKLVMGIQGKVFAIRRLKEHVMLQLPPKRRQIIRLKLNRSDIVAAKKAVGALMIDDPERENEDMPLENSDELDGDLSVQELGIAKLSGFREWLSLHPLIAGSECSKKMIIFAHHIKVLDGIQEFICEKGVGFVRIDGSTLPRDRQSAVVSFRSSSEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTIMLQAEDRAHRRGQTNAVNVYIFCGKDTSDELRWKNLNTSLHRISKTTDGKYDAMKEIVIDNVSDLGTSFKTDTSDEQSACEEELVETLLDKQPSPVNSNESEVKQDDKSVEQASFDNNSICTANITVQDKKPIPTAEADDMQPDHQLETDRHGSNEADCLRFEVTFIVIVVD 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211556g00005 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 372 IPR027417 -
Stsc211556g00005 726 SMART helicmild6 483 566 IPR001650 -
Stsc211556g00005 726 Gene3D - 418 673 IPR027417 -
Stsc211556g00005 726 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 361 IPR014001 -
Stsc211556g00005 726 CDD SF2_C_SNF 448 577 - -
Stsc211556g00005 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 619 IPR027417 -
Stsc211556g00005 726 MobiDBLite consensus disorder prediction 687 706 - -
Stsc211556g00005 726 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 645 - -
Stsc211556g00005 726 Gene3D - 163 362 IPR038718 -
Stsc211556g00005 726 Coils Coil 3 23 - -
Stsc211556g00005 726 SMART ultradead3 184 368 IPR014001 -
Stsc211556g00005 726 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 620 IPR001650 -
Stsc211556g00005 726 Pfam Helicase conserved C-terminal domain 466 566 IPR001650 -
Stsc211556g00005 726 Pfam SNF2-related domain 206 343 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211556g00005 Stsc-Chr211556 17775 25626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211556g00005 470 584 RAD5 or RAD16-like Gene Family AT1G11100 36.522 5.68e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc211556g00005 SNF2_N 2.8e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211556g00005 K25861 - gmx:100788690 892.493