Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211556g00001 ATGATCCCGCATCAACAGCAGCAGCAGATGCAACAGTACTATTCATCTTCAAACCCATTCCTTTGGGCTTCTGAACCTTCCATTCACCCTCCTGGAACCGACCCTGTTCCCAATTTCAGCGCCTATCTTTCAAATTCAACCCTTTCCGTTCCTCCCTCCTACTCTTATGCTGCCCCGCAATCAACCGATCCTCAGAATTGGATCGTTAAACAACCCCAATCCGTTGGATATGATGCTGCTGTTGGATCAGCATCAGCATTGTCTTTGACTTACGACGGCACATGGTTACAGCAAAATTTCACTCATGAGGCGACGATATTGTTGCCTGCCCAAACCAAAGGCTCCAAATCAATGAGATGTGAAGTCTGCAAAATTGATTGTAATAGCAAAGATGTTTATGAAAAGCATATATCTGGAAAGAAACATAAGAAGAATATGCAGATAAATGCTAATCCCATGCTAGCGAATGGTGGCAATAATGTAGGCAGCGAGGTAAAGAAACGGAAGCTGTCAAATGGTGGTGCACCGGTTGATTCTGCGAAGGTTTGCACAGTTTGCAACATTGTGTGCAATAGCCAAGATGTATATAACAAGCATATAGCCGGGAAAAAGCATGCGGCTCAGGTTGCATTGATGTCTAACAACGGGATTGGTCCATACATTGCTGCATTTAAGAGTCAAGGTATTGGTCCTTGGAAGAAAGCACCAAAGAAGATCAAGGTTATGCAACCTGTATGGTGTGAGACTTGCAAGGTTACTTGTAATAGCAGGGATATGTATGCTTCACACTTAGTGGGGAAGAAACATCTCAAGAACTTGGAGAAACAGTCAAAACCAAAAGCCAGTGCGAATGCTGGGAAACTGTTAACTGGCCCACAGGAAAAGCCGAATGCTGATAAAGTGAAATCGGAGGAAAAGCCTGACAGTGATAAACCAAAATCAAAGAAGGCTAAGGACTTGGATATCGAGGCGAAGAAGCTCAAGGTTGTAGAAGGTGGTACTGCTGCAGATTCTGTTAGAATGTGCACTCTTTGTAACATAGTATGCAACAGCGAGACCGTTTTCAATGCTCACCTTGCTGGCCATAAACATGCTTCTATGGTGAAGAAGCAAACTTTGGAGTCTAGTGGGACAACTGCTAGCTGA 1146 0.4398 MIPHQQQQQMQQYYSSSNPFLWASEPSIHPPGTDPVPNFSAYLSNSTLSVPPSYSYAAPQSTDPQNWIVKQPQSVGYDAAVGSASALSLTYDGTWLQQNFTHEATILLPAQTKGSKSMRCEVCKIDCNSKDVYEKHISGKKHKKNMQINANPMLANGGNNVGSEVKKRKLSNGGAPVDSAKVCTVCNIVCNSQDVYNKHIAGKKHAAQVALMSNNGIGPYIAAFKSQGIGPWKKAPKKIKVMQPVWCETCKVTCNSRDMYASHLVGKKHLKNLEKQSKPKASANAGKLLTGPQEKPNADKVKSEEKPDSDKPKSKKAKDLDIEAKKLKVVEGGTAADSVRMCTLCNIVCNSETVFNAHLAGHKHASMVKKQTLESSGTTAS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211556g00001 381 SMART ZnF_U1_5 337 371 IPR003604 GO:0003676|GO:0008270
Stsc211556g00001 381 SMART ZnF_U1_5 242 276 IPR003604 GO:0003676|GO:0008270
Stsc211556g00001 381 SMART ZnF_U1_5 115 149 IPR003604 GO:0003676|GO:0008270
Stsc211556g00001 381 SMART ZnF_U1_5 178 212 IPR003604 GO:0003676|GO:0008270
Stsc211556g00001 381 MobiDBLite consensus disorder prediction 276 318 - -
Stsc211556g00001 381 Pfam Zinc-finger of C2H2 type 182 205 - -
Stsc211556g00001 381 Pfam Zinc-finger of C2H2 type 246 269 - -
Stsc211556g00001 381 Pfam Zinc-finger of C2H2 type 342 364 - -
Stsc211556g00001 381 Pfam Zinc-finger of C2H2 type 120 142 - -
Stsc211556g00001 381 Gene3D Classic Zinc Finger 233 281 - -
Stsc211556g00001 381 Gene3D Classic Zinc Finger 334 380 - -
Stsc211556g00001 381 SMART c2h2final6 181 205 IPR013087 -
Stsc211556g00001 381 SMART c2h2final6 118 142 IPR013087 -
Stsc211556g00001 381 SMART c2h2final6 245 269 IPR013087 -
Stsc211556g00001 381 SMART c2h2final6 340 362 IPR013087 -
Stsc211556g00001 381 MobiDBLite consensus disorder prediction 297 318 - -
Stsc211556g00001 381 SUPERFAMILY beta-beta-alpha zinc fingers 177 211 IPR036236 -
Stsc211556g00001 381 SUPERFAMILY beta-beta-alpha zinc fingers 337 372 IPR036236 -
Stsc211556g00001 381 Gene3D Classic Zinc Finger 162 212 - -
Stsc211556g00001 381 Gene3D Classic Zinc Finger 103 148 - -
Stsc211556g00001 381 SUPERFAMILY beta-beta-alpha zinc fingers 241 276 IPR036236 -
Stsc211556g00001 381 PANTHER ZINC FINGER PROTEIN 385B-LIKE 235 374 - -
Stsc211556g00001 381 SUPERFAMILY beta-beta-alpha zinc fingers 111 147 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211556g00001 Stsc-Chr211556 1126 3709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211556g00001 174 368 C2H2 Transcription Factor Family AT5G61190 29.231 2.69e-22 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211556g00001 zf-met 1.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211556g00001 - - adu:107463587 654.825