Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211555g00018 ATGCCTCCATCAACTTATTCCATCGATGAAAAAACAAAAAACTTAAACCAAACTACACATATATTCAAATCAAAATTACCAGATATACCCATTAACAATACCATTCCTCTTCACACTTATTCCTTTCAAAAGCTCCCCCAAATATCCCACCGCCCATGTCTCATCACGAGCAGTGGCGAGACATACACCTATGGCGATACCCACCGCGCTTCTAGAAACTTCGCCGTGGGCCTCTTCAACCTTGGAATCCGGAAAGGTGACGTCATCATGATTTTACTCCCAAACTCTCCGGAATTTGTGTTCTCCTTTTGGGCTGCTTCTATGCTTGGCGCAGTTTCCACCCCCGCCAACCCTTCTTACACCTCTCCCGAAATCACGAAGCAGCTCAAAGCCTCCAAGGCCAAAATCGTCATTACTCATGCCATGCACGTGCACAAGCTCAAACAACAAGAAGAAGAAAACACCTTCAAAGTGATAACTGTGGACAATCCACCAGAAAATTGCATGAGTTTCTCGGCGATTTCCAGCATGGAAGGGAAGCTGCCAGAGGTGAATATTGACCCCGATGACATGGTAACACTTCCATTTTCCTCCGGCACGACGGGGTTGCCAAAGGGTGTGATTCTAACACATAGGAGTCTAATAACAAACGTGGCTCAGACGGTTGATGGAGAAAACCCTAACTTCAACATGAAGGAAGAGGATGTAGTACTTTGCGTCCTACCATTGTTCCACATTTATGCACTGCACTGTGTGATGTTGTGCTCTATGAGAGTAGGGTGTACGGTGTTGCTCATGGAGAAGTTTGAGATGAGAGCGATGTTAGAGCTTGTGGAGAAGCACAAGGTTTCAGTTGTGATGGCAGTGCCGCCGTTGGTGATGGCATTGTCAAAGAACCCCATAGCAGAGGAGTATGACCTTAGCTCCGTTCGGATGGTGATGTCCGGAGGTGCTCCACTTAAAACAAACATCGAGGAGGCTTTTTGTAGTAGGATGCCCAAAGCAATCCTCCGACAGGCTTTGGGGATGACTGAATCGGGACCAGTGATAACCATGTCATTCGGGTTTGCAAAGCATCCGATGGCATCCAAGTTAGAGCCATGTGGCACAGTCATTAGGAATGCAGAAATGAAGATCATTGACCCTTTAACGGGCTCTTCTCTCTCTTATAATACTTTGGGTGAGATCTGCATTCGAGGTCAACAAATCATGAAAGGATACCTGAATGATGAGAGGGCGACAGCAGAAGCTATTGATGAAGAAGGTTGGCTTCATACTGGTGATATTGGCTATGTGGACAATGATGATGAGCTTTTCATTGTTGATAGACTCAAAGAAATCATCAAATTCAAAGGCTATCAGGTGGCTCCGGCAGAACTTGAAGGCCTTCTTATGAGTCATCCTTCCATTGAAGATGCAGCTGTTGTCCCGCAAAAAGATGATGTAGCTGGTGAAGTTCCTGTTGCTTTTGTGGTGAGGTCATCAAATAATGGTGATTTTAATCTTGTTACTGAAGATGCTGTAAAGGACTTTATAGCTAAACAGGTTGTGTTTTACAAGAGGCTGCATAGAATAGTATTCATTGATAAGATTCCAAAGTCTGCTATTGGCAAGATATTAAGAAAAGAACTCAAAGCAAAGCTCCCTAGCTACCAAGTCAACCCTATCTAA 1671 0.4458 MPPSTYSIDEKTKNLNQTTHIFKSKLPDIPINNTIPLHTYSFQKLPQISHRPCLITSSGETYTYGDTHRASRNFAVGLFNLGIRKGDVIMILLPNSPEFVFSFWAASMLGAVSTPANPSYTSPEITKQLKASKAKIVITHAMHVHKLKQQEEENTFKVITVDNPPENCMSFSAISSMEGKLPEVNIDPDDMVTLPFSSGTTGLPKGVILTHRSLITNVAQTVDGENPNFNMKEEDVVLCVLPLFHIYALHCVMLCSMRVGCTVLLMEKFEMRAMLELVEKHKVSVVMAVPPLVMALSKNPIAEEYDLSSVRMVMSGGAPLKTNIEEAFCSRMPKAILRQALGMTESGPVITMSFGFAKHPMASKLEPCGTVIRNAEMKIIDPLTGSSLSYNTLGEICIRGQQIMKGYLNDERATAEAIDEEGWLHTGDIGYVDNDDELFIVDRLKEIIKFKGYQVAPAELEGLLMSHPSIEDAAVVPQKDDVAGEVPVAFVVRSSNNGDFNLVTEDAVKDFIAKQVVFYKRLHRIVFIDKIPKSAIGKILRKELKAKLPSYQVNPI 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211555g00018 556 Gene3D - 445 550 IPR045851 -
Stsc211555g00018 556 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 546 - -
Stsc211555g00018 556 CDD 4CL 26 544 - -
Stsc211555g00018 556 Pfam AMP-binding enzyme 51 450 IPR000873 -
Stsc211555g00018 556 Gene3D - 12 444 IPR042099 -
Stsc211555g00018 556 SUPERFAMILY Acetyl-CoA synthetase-like 35 548 - -
Stsc211555g00018 556 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Stsc211555g00018 556 FunFam Long-chain-fatty-acid--CoA ligase FadD 23 445 - -
Stsc211555g00018 556 FunFam 4-coumarate--CoA ligase 2 446 550 - -
Stsc211555g00018 556 Pfam AMP-binding enzyme C-terminal domain 459 538 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211555g00018 Stsc-Chr211555 86186 89813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211555g00018 21 476 Monolignol Biosynthesis Gene Families AT3G21240 58.442 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211555g00018 K01904 - gmx:547930 709.909