Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211552g00009 ATGAAAGGAGAATATGTAGAACAACATCACCTTCCAAAGAGTGAAGCACAAAACATGTTCTCAAAGCTTCACCACCAATCACCGCCTCATCAACAGCATCCGTTTTCTCTTCACAATCCATTCCAACACTTCTCAAGGGATCAATGCCAGCCCTCTGCCACGCCGGAAGAAGATAGCCATGGCGCCGGAGGCGGTGTAGGCGGCGGCGGAGCCACTTCTCAGAAGCCGAACTCCTCCGGCGACGGAGCAACCATAGAGGTTGTGAGGAGGCCAAGAGGCCGCCCGCCGGGCTCCAAGAACAAGCCGAAACCGCCAGTGATCATAACGCGTGAGCCCGAGCCCGCCATGAGCCCGTACATTCTAGAAGTTTCTAGCGGAAACGACGTCGTTGAAGCGTTAGCGAGGTTCAGTCGGAGGAGGAACATGGGGATTTGCGTCCTTAGTGGATCCGGAACCGTTGCTAACGTCACGTTACGTCAGCCCGGAGCAGCTTCCGGAGCCACCGTTACATTTCACGGCCGATTCGATATCTTATCTGTTTCGGCCACGTTTCTTCCGCAGTCGTCGCAGTCGGTTCCAACCGCCTTCGCCATCTCGCTTGCCGGACCGCAGGGGCAGATCGTCGGAGGACACGTCGCCGGAGCACTTACGGCCGCCGCGACGGTGTTTGTTGTGGCGGCTTCGTTCAACAATCCTTCGTTTCATAGGCTGCCTCCGGAGGAAGATGCGAGGAACGAGGTTTCCGGAGGGGAGGGTCAGTCGCCGGCGGTGTCTGGCGGCGGTGGTGAGAGTGGACATGGTCAAGCGGTGGATTCGTGTGGGATGTCGATGTATAGCGGCGTTCATCACTTGCCGGGGGCGGCGGCGTCGTCCGATGTGATATGGACCCCGACGGCAAGGGCGCCACCACCGCCTTACTGA 921 0.5852 MKGEYVEQHHLPKSEAQNMFSKLHHQSPPHQQHPFSLHNPFQHFSRDQCQPSATPEEDSHGAGGGVGGGGATSQKPNSSGDGATIEVVRRPRGRPPGSKNKPKPPVIITREPEPAMSPYILEVSSGNDVVEALARFSRRRNMGICVLSGSGTVANVTLRQPGAASGATVTFHGRFDILSVSATFLPQSSQSVPTAFAISLAGPQGQIVGGHVAGALTAAATVFVVAASFNNPSFHRLPPEEDARNEVSGGEGQSPAVSGGGGESGHGQAVDSCGMSMYSGVHHLPGAAASSDVIWTPTARAPPPPY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211552g00009 306 MobiDBLite consensus disorder prediction 19 55 - -
Stsc211552g00009 306 Gene3D - 117 248 - -
Stsc211552g00009 306 FunFam AT-hook motif nuclear-localized protein 117 248 - -
Stsc211552g00009 306 MobiDBLite consensus disorder prediction 234 271 - -
Stsc211552g00009 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 62 275 IPR014476 GO:0003680
Stsc211552g00009 306 ProSiteProfiles PPC domain profile profile. 113 250 IPR005175 -
Stsc211552g00009 306 MobiDBLite consensus disorder prediction 1 110 - -
Stsc211552g00009 306 CDD DUF296 118 216 IPR005175 -
Stsc211552g00009 306 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 231 IPR005175 -
Stsc211552g00009 306 SUPERFAMILY AF0104/ALDC/Ptd012-like 115 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211552g00009 Stsc-Chr211552 71486 73340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211552g00009 81 304 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 66.667 9.08e-99 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211552g00009 - - adu:107460948 498.049