Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211552g00005 ATGGCTTCTTCTTCTTCTTTCCTAATCATATTCACTTTTCTTCTACTTGCTAACCTCAACACTGTTGCATATGCAGCGGCTAATGAAACCAGAGAAACGCCGCCGCCACCGACACCGCCGCCGCCGGATTCCGAAAAATCTTCATCCGCCTTCAAGCCAGGCATGGCGGTGGTAGTTGGCGTATTAACCACTATGTTCTCTCTTACCTTCCTCCTCCTCCTCTACATCAAGCACTGCAACGGCGGCGCCACCGACTCCACCGGAACTACCGGAACCGGCTACCATTACACCTCACGCGCGGCAACACTCGCCGGAAGAAAAAACTCCGGCATCGACCGTTCCATAGTGGAATCGCTTCCAATCTTCAGATTCGGATCCCTCCGGGGACAAAAGGAAGGACTCGATTGCGCGGTCTGTCTCGCGAAATTCGAGTCCTCCGAAGTCCTCCGGCTCCTCCCGAAGTGCAAGCACGCGTTCCACGTGGAGTGCGTGGACACGTGGCTCGACGCGCACTCCACGTGTCCACTGTGCCGGCACCGGGTGGATCCGGAGGACATTCTTCTGGTAGACAACAATGCTGCCGCACCGGTGCACAGTCAGAGCGAGAACGAACCGTGTTCGGAGAGGTACGAAACACGGCGAGTCTCCGGAAGGCACTCGTCTGTTGGTGAGAAAGAAGGAGGGTTTTTAGAGATCATCATTGAGAACGAGAACGAAACAGAAAGACGAAACGCAGCGCCAACGTCGTCGTTTAGAAGGTCTTTGGATAGTGCCACGTGTGCAACGACATCGAGATCGAATAATAACAATAACAAGAAGTGGTTAATGCGTTCAAGAAAAGACGGGATGCTGTTGGTGAAAACGACGACGCAGCAAGAAGTGGAGAAAGAGAAAGAGAAAGAAAGGAGGAGCACCGGGCAGTTACAACGGTGGAGCGATGTTCAGCCGTCGGATCTACTTTATCTGACATCGGAAATGATAATAAGCAAGCATAATAGCGGCGAAACGGGGGGCAATTTGGTAATTAACACGAGGAGTGTGTCTGAGTTAACGGGGTTAAGCAGGTTTGTGAGGAACGGTAACGGTGGTGACGGTGGTAACAGGGAAGAGGAACGAGGAGGAGGAAGAGAAGAGGGGATGGTTACGAGGTGGTTGGGATGGATATCAAGAACGCAGACACAGCCAGCTGTACGGTAG 1197 0.5272 MASSSSFLIIFTFLLLANLNTVAYAAANETRETPPPPTPPPPDSEKSSSAFKPGMAVVVGVLTTMFSLTFLLLLYIKHCNGGATDSTGTTGTGYHYTSRAATLAGRKNSGIDRSIVESLPIFRFGSLRGQKEGLDCAVCLAKFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRHRVDPEDILLVDNNAAAPVHSQSENEPCSERYETRRVSGRHSSVGEKEGGFLEIIIENENETERRNAAPTSSFRRSLDSATCATTSRSNNNNNKKWLMRSRKDGMLLVKTTTQQEVEKEKEKERRSTGQLQRWSDVQPSDLLYLTSEMIISKHNSGETGGNLVINTRSVSELTGLSRFVRNGNGGDGGNREEERGGGREEGMVTRWLGWISRTQTQPAVR 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211552g00005 398 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Stsc211552g00005 398 MobiDBLite consensus disorder prediction 364 378 - -
Stsc211552g00005 398 MobiDBLite consensus disorder prediction 243 273 - -
Stsc211552g00005 398 MobiDBLite consensus disorder prediction 240 310 - -
Stsc211552g00005 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 185 IPR013083 -
Stsc211552g00005 398 MobiDBLite consensus disorder prediction 204 222 - -
Stsc211552g00005 398 Pfam Ring finger domain 135 178 IPR001841 -
Stsc211552g00005 398 SUPERFAMILY RING/U-box 119 183 - -
Stsc211552g00005 398 CDD RING-H2_EL5-like 135 178 - -
Stsc211552g00005 398 MobiDBLite consensus disorder prediction 291 307 - -
Stsc211552g00005 398 MobiDBLite consensus disorder prediction 356 381 - -
Stsc211552g00005 398 SMART ring_2 136 177 IPR001841 -
Stsc211552g00005 398 MobiDBLite consensus disorder prediction 197 222 - -
Stsc211552g00005 398 MobiDBLite consensus disorder prediction 28 49 - -
Stsc211552g00005 398 MobiDBLite consensus disorder prediction 32 46 - -
Stsc211552g00005 398 FunFam RING-H2 finger protein ATL43 111 185 - -
Stsc211552g00005 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211552g00005 Stsc-Chr211552 41115 42398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211552g00005 48 397 C3H Transcription Factor Family AT5G05810 47.326 1.95e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211552g00005 K19041 - twl:119999828 298.13