Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211552g00004 ATGCTTCCTTTCCTTTTTCCACATATCCATTCTCACATTCTCATCACTCAGCAAGGGTTCTTGAATTTGAAAATCGATCGATCGATGACTCGGACGAAGATAAAGATAAAGAAAATAGATAACATAACGGCAAGGCAGGTGACGTTCTCGAAGAGGAGGAGAGGGCTGTTCAAGAAGGCGAATGAGCTTTCTGTGCTTTGCGATGCTGATCTTGCTCTCATTGTTTTCTCTGCTACCGGCAAGCTCTTCCATTATGGCAGTTCCAGCTTGGAGGAGACAATTACAAGGTACAATAGGCACTTTCATGACATGAACAAATTGGAAAGACCTCCCAACCTGCAGATTGAGGATAGTAACACCAAGTTATTAAGTGAAGAAGTTGCAAAACGAACTCAACAACTAAGGAGGTTGGATGGTGAGGATCTTGAAGGACTAGACTTGAGGGACTTGCAGAACTTGGAGAAAACACTTGAAACAGCACTCAGCCGTGTCATTCACATGAAGGACAAGCGGATTATGGGTGAGATTTCTCAACTTCAGAGTAAGGGTTTCACCTTGGAAGAGGAGAACGAGCACTTAAAGCGAAAGGTGGCTATTCTGCGTGAAGGGAAAATTACTCCTCCAGTTCTGTTGGATTTGGATAATACTACTGATGAGAATGATGAAAATAATAATAACAATAACAATGAAGGCCCCTTCATAGAATCCATGAATAACATTAGCAGTTGCAGCAGTAACCTTCCTCCTGAAGATGATTCCTCTGACACTTCTCTTAAGTTAGGGTTGCCCTTCTCTAACTGA 801 0.4232 MLPFLFPHIHSHILITQQGFLNLKIDRSMTRTKIKIKKIDNITARQVTFSKRRRGLFKKANELSVLCDADLALIVFSATGKLFHYGSSSLEETITRYNRHFHDMNKLERPPNLQIEDSNTKLLSEEVAKRTQQLRRLDGEDLEGLDLRDLQNLEKTLETALSRVIHMKDKRIMGEISQLQSKGFTLEEENEHLKRKVAILREGKITPPVLLDLDNTTDENDENNNNNNNEGPFIESMNNISSCSSNLPPEDDSSDTSLKLGLPFSN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211552g00004 266 SUPERFAMILY SRF-like 30 102 IPR036879 GO:0003677|GO:0046983
Stsc211552g00004 266 FunFam Transcription factor, MADS-box 41 111 - -
Stsc211552g00004 266 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 85 IPR002100 GO:0003677|GO:0046983
Stsc211552g00004 266 Pfam K-box region 119 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc211552g00004 266 MobiDBLite consensus disorder prediction 210 266 - -
Stsc211552g00004 266 CDD MADS_MEF2_like 40 103 IPR033896 GO:0000977|GO:0045944
Stsc211552g00004 266 PANTHER SERUM RESPONSE FACTOR HOMOLOG 31 219 - -
Stsc211552g00004 266 ProSitePatterns MADS-box domain signature. 31 85 IPR002100 GO:0003677|GO:0046983
Stsc211552g00004 266 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Stsc211552g00004 266 Coils Coil 176 196 - -
Stsc211552g00004 266 ProSiteProfiles K-box domain profile. 113 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc211552g00004 266 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677|GO:0046983
Stsc211552g00004 266 MobiDBLite consensus disorder prediction 220 266 - -
Stsc211552g00004 266 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Stsc211552g00004 266 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Stsc211552g00004 266 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Stsc211552g00004 266 Coils Coil 150 170 - -
Stsc211552g00004 266 Gene3D - 41 110 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211552g00004 Stsc-Chr211552 17680 23912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211552g00004 29 263 MADS-box Gene Family AT4G24540 51.261 1.13e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc211552g00004 K-box 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211552g00004 - - gmx:100776749 234.572