Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211552g00002 ATGGCCTATTCAGGTTCACATGATGTTAGGCTATACAGCAGTATTGGAAGCTGCGGTTTATGTGATAAGCCCGTGTGTGCAGATCGATTGTGTTTCGTAAATATCAATCATTCGCCACGAGGTTTGGGGCGGGATTCTTCTGCGCTTCTTCTGTCCAGAGTACATGTCCCACTTAGGCCCTTAAGGTGTGTTTCAGTGTGCCAATCTGTGCTAATACCAGCTGGAGGGTGTGAGGCTCCACTCAGGAATTTTGCCACTATTTCTTTATCAAGGCCACATTTAACTATACCAGGAAGACCCATTGTACAATTTGTGCATCAATTCATCCCTGCCCTTGGTATCATTGGTTTTGCTGTGTGGGGTCTTGAGCCACTTCTACGCCTGAGCAGGAAACTATTTCTGCAAAAGACTGACAAAAGCTGGAAGAAAAGTAGTTGGCGTCATTTTATGAAATCTTATCTTCAACCTTTGCTGCTATGGTCTGGGGTTATGCTCTTATGCAGGGATTTAGATCCATTAGTCTTACCATCGGAAACCAGTCAGGCTGTGAAGCAACGGCTGCTGAGTTTTGTGAGATCCTTGTCAACAGTCCTTACATTTGCTTATTGTTCTTCAAGCTTAATTCAGCAAGCACAAAAAAGTTGTATGGAGATGAATGACTCCAGTGATGAAAGAAATACGAGCATTGATTTTACTGGTAAAGCTGTATATACTGCTATTTGGGTAGCTGCTGTGTCACTGTTCATGGAGTTGCTGGGTTTCTCCACACAGAAATGGTTGACTGCTGGTGGTTTGGGCACAGTGTTGCTTTCCCTTGCAGGCCGTGAGATATTCATGAACTTCCTTTCAAGTATAATGATTCATACAACTCGGCCATTTGTTGTGAATGAGCGGATTAAAACAAAGATTAAAGATGATGAGGTTTCTGGTAGAGTTGAGCATGTAGGCTGGTGGTCACCAACAATTGTTAGAGGTGCTGATTGTGAAGCCGTACACATTCCTAACCAGAAGTTGAGTGTAAACATAGTGAGGAATCTTAGTAAGAAATCGCATTGGCGCATCAAGACTCACCTTGCTATCAGTCACTTGGATATTAACAAGATCAATAATATCTTAGCTGATATGCGCAAGGTTTTGGCTAAAAATCCTCAAATAGAGCAGAAAAGACTGCACAGAAGGGTTTTTCTGGAGGATATCAATCCAGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTTAAAACTTCACATTCTGAAGAGTACCTTCGTGTTAAGGAGGCTATTCTTTTGGATCTTCTGAGAGTTATCGGTCATCATGGAGCTCAACTAGCGACCCCAATCCGCACAATCCAGAAGATGTACAGTGTCAGTGATTTAGAAGCCGATCCATTTGATGAGACCCTATTCACTCGTTCGAGAGCTAAGTCTAACCGTCCATTCTCATCAATGGAATCAACTTACAATGTTAAGCCTTCAAGTCATTCGACCATTTCGAATGAGAAGGATACCAAGTTTGATGAAATCTTGTCATCTGACTTAAAAGTAGATGATGACTCTGCAGGGCCATCAACCTCCACATCCAGTGTAAACTCCAACAGCGAGAAATTTAAGTCATCTTCTGAATCCAAAACCGAGAATATGATTAGTGACAATCCGGTCCAGAAGACATCCAAATCCATGCATCCTAAGGAAAGCGCAGGAAGTGCGGGAAACGTGACATCACCGAAAGTTTTGTTGACTTCGAAGAAGTCTGGCAGAGGAGAGACTACTAATTCTGTTACTTCTTCACCATCAAAGAAAGGTGAAGAAAAAGATAAATCCGGTGGCTCATCATCGTCAACTATTCCTTCCTTGAAAGAGAATATTGTTCTTGATGCTGCCTTACTGGGAATGAAACGAACTCTTGAAATAGAAGACGAAATTAGTCCACCTGTCCCTGCAGAGCCTCAAGAATTCGCTATCCAACAAAAAGGGCGTGAACCTCGGGGAATTAAGGATAAAAAGGATGGTAAGAAGTCTCCTAATGCTAATTAG 2037 0.4212 MAYSGSHDVRLYSSIGSCGLCDKPVCADRLCFVNINHSPRGLGRDSSALLLSRVHVPLRPLRCVSVCQSVLIPAGGCEAPLRNFATISLSRPHLTIPGRPIVQFVHQFIPALGIIGFAVWGLEPLLRLSRKLFLQKTDKSWKKSSWRHFMKSYLQPLLLWSGVMLLCRDLDPLVLPSETSQAVKQRLLSFVRSLSTVLTFAYCSSSLIQQAQKSCMEMNDSSDERNTSIDFTGKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLSLAGREIFMNFLSSIMIHTTRPFVVNERIKTKIKDDEVSGRVEHVGWWSPTIVRGADCEAVHIPNQKLSVNIVRNLSKKSHWRIKTHLAISHLDINKINNILADMRKVLAKNPQIEQKRLHRRVFLEDINPENQALMILISCFVKTSHSEEYLRVKEAILLDLLRVIGHHGAQLATPIRTIQKMYSVSDLEADPFDETLFTRSRAKSNRPFSSMESTYNVKPSSHSTISNEKDTKFDEILSSDLKVDDDSAGPSTSTSSVNSNSEKFKSSSESKTENMISDNPVQKTSKSMHPKESAGSAGNVTSPKVLLTSKKSGRGETTNSVTSSPSKKGEEKDKSGGSSSSTIPSLKENIVLDAALLGMKRTLEIEDEISPPVPAEPQEFAIQQKGREPRGIKDKKDGKKSPNAN 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211552g00002 678 Gene3D - 292 345 IPR023408 -
Stsc211552g00002 678 MobiDBLite consensus disorder prediction 476 622 - -
Stsc211552g00002 678 Gene3D - 187 291 - -
Stsc211552g00002 678 MobiDBLite consensus disorder prediction 518 598 - -
Stsc211552g00002 678 MobiDBLite consensus disorder prediction 476 497 - -
Stsc211552g00002 678 MobiDBLite consensus disorder prediction 641 678 - -
Stsc211552g00002 678 MobiDBLite consensus disorder prediction 498 515 - -
Stsc211552g00002 678 Pfam Mechanosensitive ion channel 234 442 IPR006685 GO:0016020|GO:0055085
Stsc211552g00002 678 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 54 675 IPR045042 -
Stsc211552g00002 678 SUPERFAMILY Sm-like ribonucleoproteins 277 347 IPR010920 -
Stsc211552g00002 678 MobiDBLite consensus disorder prediction 659 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211552g00002 Stsc-Chr211552 3740 8946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211552g00002 56 677 Mechanosensitive Ion Channel Family AT5G10490 51.869 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211552g00002 K22047 - gmx:100797302 821.617