Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211549g00010 ATGGGTGAGAAGGATATTGGTAATGAGGCTGTGGAGTTGAGTTTGAGTTTGAGTTTGGGAGGATGTTCTTCTTCATCTCCTCCACTTTTGAAGCCACAGAGATCGGTTCCTGTGAATAACAACATCAACAACAAGAGTTCCTGGAATGAGTTGTTTCAGTTACCACAGGTAAATAGGAGAACGGATATGAGGCCGTTCCACGGCGGCGGAATCAACATGAATTCTACGCCGTCAACGGCGGAGGCTCCGCCGCCGGATTGCAACCAGGACAACCGTGATTCATCGCCCAACAACAGCAGTTTATCGAGCGGCAGTTGCAAGAGAAGCGATAGAGAAGAAGACAATGGCGGCGAGGGCGGCGCCGTCGGCATCGAATTGGCGTCGTGTTCTCGGGGAAGCGATGACGAGGACGGCGGCGGAGGTGGCGGCGGAGATGCCGCGAGGAAGAAGCTGAGGCTGACGAAGGAGCAGTCACTGTTGTTGGAAGAAACGTTCAAGCAGCATAACACGCTCAACCCGAAACAAAAGCAGGCATTGGCAAAGGAGTTGAATCTGAGGGCCAGACAGGTGGAGGTGTGGTTTCAGAATAGAAGAGCAAGGACCAAGTTGAAGCAAACAGAAGTGGATTGTGAATACTTGAAGAGATATTGTGAGAATCTAAGTGAAGAGAATAGGAGATTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGCTATCTCCACAGCTCTACATGCATATGAACCCTCCAACAACTCTTACAATGTGCCCTTCTTGTGAGCGCGTCGCCGTCTCATCCGCATCGTCCTCCAGCTCTGCCGCCGCCTCCGCCACTCACTTGCCGGCACCACAAAGTAATTGCAACAACTCCTCGGGTGTGAACATCCGCCGGCCGGTGCACGTCAACACATGGCCATTCGACGGACCGATTTCACGGCCATAG 942 0.5223 MGEKDIGNEAVELSLSLSLGGCSSSSPPLLKPQRSVPVNNNINNKSSWNELFQLPQVNRRTDMRPFHGGGINMNSTPSTAEAPPPDCNQDNRDSSPNNSSLSSGSCKRSDREEDNGGEGGAVGIELASCSRGSDDEDGGGGGGGDAARKKLRLTKEQSLLLEETFKQHNTLNPKQKQALAKELNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLSEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSSAAASATHLPAPQSNCNNSSGVNIRRPVHVNTWPFDGPISRP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211549g00010 313 Coils Coil 210 240 - -
Stsc211549g00010 313 Gene3D - 142 209 - -
Stsc211549g00010 313 FunFam Homeobox-leucine zipper protein 18 133 209 - -
Stsc211549g00010 313 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 280 - -
Stsc211549g00010 313 MobiDBLite consensus disorder prediction 18 123 - -
Stsc211549g00010 313 Pfam Homeobox associated leucine zipper 204 238 IPR003106 GO:0006355|GO:0043565
Stsc211549g00010 313 MobiDBLite consensus disorder prediction 71 105 - -
Stsc211549g00010 313 MobiDBLite consensus disorder prediction 128 147 - -
Stsc211549g00010 313 ProSitePatterns 'Homeobox' domain signature. 179 202 IPR017970 GO:0000981|GO:0006355
Stsc211549g00010 313 SMART halz 204 247 IPR003106 GO:0006355|GO:0043565
Stsc211549g00010 313 MobiDBLite consensus disorder prediction 18 56 - -
Stsc211549g00010 313 Pfam HD-ZIP protein N terminus 13 112 IPR006712 GO:0005634
Stsc211549g00010 313 CDD homeodomain 148 205 IPR001356 GO:0003677
Stsc211549g00010 313 SUPERFAMILY Homeodomain-like 134 205 IPR009057 -
Stsc211549g00010 313 ProSiteProfiles 'Homeobox' domain profile. 144 204 IPR001356 GO:0003677
Stsc211549g00010 313 SMART HOX_1 146 208 IPR001356 GO:0003677
Stsc211549g00010 313 Pfam Homeodomain 148 202 IPR001356 GO:0003677
Stsc211549g00010 313 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211549g00010 Stsc-Chr211549 64191 68267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211549g00010 45 261 Homeobox Transcription Factor Family AT3G60390 62.069 7.08e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc211549g00010 HD-ZIP_N 3.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211549g00010 K09338 - gmx:100819624 284.648