Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211548g00020 GCTAATGTGCTGTTCTTGGAATCCCCTGCTGGAGTGGGATTCTCCCAGTCAGGAAATTCATCACAAATTTTCCCTCCTTCTTCCGGTGACAAGGCTGCTACTAAAGATGCGTACGCGTTCCTGGTTAACTGGCTAGAGCGGTTTCCGGAGTACAAAGACCGTGACATTTACATTACCGGCGAAAGCTATGCCGGTCACTATGTGCCTGAGCTTGCATACACAATTGTCATCAACAATTTTTTCAGAAAACTTGCCAACCAATCTGTTATCAACCTTCAAGGCATTGCTATAGGAAACCCTTGGATTGATGATTTTACTGGTTTAAAGGGGTATTTTGATTACCTATGGACTCACGCCTTGAACTCAGACGAAACTCATGAGCTGATTGAGAAACACTGTGACTTCAAATCCGAATACGTTTCCCCTATTTGCATCAATGCAACAAGAAAGTCCTTCGCTGAGATTGGGGACATTGACACCTCTCAAATATACGCACCAACGTGTCACGACACCTCTCTTAAACCTGGACAAACTGCTTCAGTATACGATTTCGACCCATGCTCTGATGTGTACGTGGGCGCATATCTAAACAGGCCAGAGGTCCAACAAGCTCTTCATGCAAAACCCACAAATTGGACTCATTGCAGCAAGTTTCAATGGAACGACAGGCCAATTACAGTCCTACCCCTCATCAAGAAGCTCATCAACAATAATATTAATGTGTGGATATACAGTGGTGATGTAGATTCAGTAGTTCCAGTTACAGCCACGAGATATGCACTCAACGTCCTCAAACTCCCAATCGTGACCCCATGGTATCCATGGTATTCTGAAAATGAGATTGGAGGATATGCGGTGCAATACAAAGGTTTGGTATTTGCCACAGTGAGAGGAGCAGGGCATTTGGTTCCAAGCTGGCAGCCAGAAAGAGCTTTCAACTTGATCTTTGCATTCCTCAGTGGATATCCTTACCCTCCCCCATAG 984 0.4492 ANVLFLESPAGVGFSQSGNSSQIFPPSSGDKAATKDAYAFLVNWLERFPEYKDRDIYITGESYAGHYVPELAYTIVINNFFRKLANQSVINLQGIAIGNPWIDDFTGLKGYFDYLWTHALNSDETHELIEKHCDFKSEYVSPICINATRKSFAEIGDIDTSQIYAPTCHDTSLKPGQTASVYDFDPCSDVYVGAYLNRPEVQQALHAKPTNWTHCSKFQWNDRPITVLPLIKKLINNNINVWIYSGDVDSVVPVTATRYALNVLKLPIVTPWYPWYSENEIGGYAVQYKGLVFATVRGAGHLVPSWQPERAFNLIFAFLSGYPYPPP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211548g00020 327 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 308 IPR001563 GO:0004185|GO:0006508
Stsc211548g00020 327 ProSitePatterns Serine carboxypeptidases, histidine active site. 291 308 IPR033124 GO:0004185
Stsc211548g00020 327 Gene3D alpha/beta hydrolase 1 170 IPR029058 -
Stsc211548g00020 327 PRINTS Carboxypeptidase C serine protease (S10) family signature 6 16 IPR001563 GO:0004185|GO:0006508
Stsc211548g00020 327 PRINTS Carboxypeptidase C serine protease (S10) family signature 291 304 IPR001563 GO:0004185|GO:0006508
Stsc211548g00020 327 PRINTS Carboxypeptidase C serine protease (S10) family signature 44 69 IPR001563 GO:0004185|GO:0006508
Stsc211548g00020 327 ProSitePatterns Serine carboxypeptidases, serine active site. 58 65 IPR018202 GO:0004185
Stsc211548g00020 327 Pfam Serine carboxypeptidase 1 320 IPR001563 GO:0004185|GO:0006508
Stsc211548g00020 327 SUPERFAMILY alpha/beta-Hydrolases 1 324 IPR029058 -
Stsc211548g00020 327 Gene3D - 187 218 - -
Stsc211548g00020 327 FunFam Carboxypeptidase 227 321 - -
Stsc211548g00020 327 Gene3D - 227 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211548g00020 Stsc-Chr211548 111552 116686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211548g00020 195 323 Calmodulin-binding Proteins AT2G22960 32.847 8.01e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211548g00020 K16297 - gmx:100807212 457.988