Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211547g00005 ATGTCTCAAGCTACTCAAATGGGTACAGAGCTCACGAAATTGACAACCAAGCGATCGCAATGCGTTATCAAGGTGTGGTTGGTTAGGATGTGGGAAGGTCCCCCAAAGGCCAATGACGGTGAAGGTGGTGCTTGGGAAATTTTGTTTCATGATTACAAGACGGGTTCTTCATATCTCCCACCCAATGTTTCCCTTCAATTAATAGCCTCTGTTATCAATGAGGAACCCTTGCAGGAGAAAGTTTTGTTTGATTTTCTTGCTGAGGTGGTTAGGAAGGAAGACCCAAAGGACATGGTAACTAAGTTTGGGACTAACAGCAAACGACTAGGACTCAGAGTTGAGGATGCTGAGTATTTGTACGCTGTGGGGTGTTTGGTCGATCGCATCAAACCATATATTGAAGAAGACAAGGCCGAGCCCCTCATAGTTGCTTTTCAACTTTTCAGAGTCAAAGAATGGAATGTCATATTGGGGGGGAAGAACTATCGCTCTGCTGTTGATGATCTGCGAGGAGGCATGTGTGGTGTTGAAACCATTGAGAATGTGTTGAATGCTGAAGAGTTCGGAAATAAATGGATATCCTGTGAAATAGAGGATTTCGATGTCGGAAAGAATGATTGGTGTTTTATTGCCTGTCACGACTGTCATAAGAAATGCAAGAAAGTTGATGATCATTTTGTCTGTGATAATGATAACTGCACCAAACAAATTGCGGAGGTGGAGCTTAGATACAAACTCTTTGCATATGTTAATGATTCAACCGGAAGCATGTTTGTTGTATTATGGGACACCGAAGCTACCCAAATTGTTGGTCTGACTGCAGCTAAATTAAGGGGCTTGAATAAGGAGGCAATGTAA 858 0.4266 MSQATQMGTELTKLTTKRSQCVIKVWLVRMWEGPPKANDGEGGAWEILFHDYKTGSSYLPPNVSLQLIASVINEEPLQEKVLFDFLAEVVRKEDPKDMVTKFGTNSKRLGLRVEDAEYLYAVGCLVDRIKPYIEEDKAEPLIVAFQLFRVKEWNVILGGKNYRSAVDDLRGGMCGVETIENVLNAEEFGNKWISCEIEDFDVGKNDWCFIACHDCHKKCKKVDDHFVCDNDNCTKQIAEVELRYKLFAYVNDSTGSMFVVLWDTEATQIVGLTAAKLRGLNKEAM 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211547g00005 285 Pfam Replication factor-A C terminal domain 203 282 IPR013955 -
Stsc211547g00005 285 Gene3D - 171 285 IPR012340 -
Stsc211547g00005 285 SUPERFAMILY Nucleic acid-binding proteins 191 282 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211547g00005 Stsc-Chr211547 20237 21981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211547g00005 209 283 Core DNA Replication Machinery Family AT5G08020 35.526 5.34e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211547g00005 - K07459 ahf:112716567 231.491