Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211545g00007 ATGGTGGCTTTTGGCGGGAAAAAGATGCGACAAATGGTTGTTGGCTTTGGTGGAAGTGGCCTCGGCCAGGTCGTTGCCGCCGTCGCCGTCTCCTTCCTCCTCCGCCTCTTCACTTCTCCCGGTCCCGCCTTCCCTCCGGACGATGAAAATAATAACAGCGACTACGATGCGCCGGAGAACGGTATCCACGACGCCGAAGCTCCGCCATCCGGAAAGGTTACGCCGGTTACAATCCGATGGAACAACATTAATTGCTCTCTTTCCGATAAATCGTCCAAGTCTGTGAGGTTTTTGCTGAAAAATGTGAGTGGAGAAGCAAAACCTGGAAGGTTGCTAGCTATAATGGGGCCTTCGGGTTCAGGGAAGACAACTCTGCTTAATGTTCTTGCAGGCCAGTTGGCGGCATCGCCTCGGTTGCATTTGTCAGGCCGTTTGGAGTTCAATGGAAATCCTAGTTCAAGGAACACTTACAAGTTTGCTTATGTGAGGCAGGAGGATCTCTTCTTCTCGCAACTCACTGTCCGGGAAACATTGTCTCTTGCTGTAGAACTCCAGCTTCCCCATATTTCATCTGCAGAAGAGAGAGATGAATACGTGGACAATCTCCTTTTAAAACTAGGCTTGGTCAGTTGTGCTGATACCAATGTTGGTGATGCAAAAGTTCGCGGAATCAGTGGTGGTGAAAAGAAACGCTTATCCTTGGCATGTGAACTACTTGCAAGTCCATCTGTTATATTTGCTGATGAACCTACAACAGGACTCGATGCCTTCCAAGCTGAGAAAGTCATGGAAACTCTCCAAAAACTTGCACAAGATGGTCATACTGTGATTTGCTCTATACATCAGCCAAGAGGTTCAGTGTACAGTAAATTCAATGACATTGTCTTGCTAACAGAGGGTTCACTTGTTTATGCTGGTCCTGCCCGTGGTGAACCATTGGCATACTTCTCAAAATTTGGGTACAACTGCCCTGATCATGTGAATCCTGCTGAATTTTTGGCTGATCTTATATCTGTAGACTACAGTTCTGCTGATAGTGTTTATTCCTCTCGAAAAAGGATTGATGGTCTTGTTGAGTCATTCTCACAAATACTATCTACATCTACTACAATATATGCAACTCCAATTACTGTGGATGAGCTCTCAAAAAGTAGAAAGAAAATCAGTAGAAGGACTATTGTGCAGAAGAAAGGGGGATGGTGGAAGCAATTTTGGCTGCTTCTTAGGCGAGCATGGATGCAGGCTTCGCGAGATGTACCCACAAACAAAGTTAGAGCAAGGATGTCAATAGCATCAGCAATTATCTTTGGTTCAGTTTTCTGGAGAATGGGAAATTCCCAGACTTCAATTCAAGACAGAATGGGATTGCTTCAGGTAGCTGCAATAAATACAGCAATGGCAGCTCTCACAAAGACTGTTGGTGTGTTTCCAAAGGAACGATCCATTGTTGATAGAGAACGTGCAAAAGGCTCCTATTCTTTGGGTCCATATTTGTTCTCAAAATTGTTAGCAGAGATTCCAATTGGAGCCTCATTTCCATTAATGTNNNNNNNNNNGATGGCTCGTCTCCATCCTACTTTGCTCAGATTTGGGAAATTCTGTGGAATTGTCACTATAGAATCTTTTGCTGCATCCGCAATGGGTCTCACTGTTGGTGCTATGGTTCCAACAACTGAAGCTGCAATGGCGGTAGGCCCATCTCTTATGACAGTTTTTATTGTATTTGGAGGCTACTATGTCAATCCTGAGAATACCCCCGTCATCTTCCGTTGGATTCCTAGTGCTTCTCTAATTAGATGGGCCTTTCAAGGACTTTGCATCAATGAATTTAATGGTCTTCAATTTGAGCATCAGAATTCTTTTGATATACAAACTGGAGAACAGGCACTAGAACGCCTTTCCTTTGGGAAAAGTAGGATTAAGGATACAGTGGTAGCACAAAATAGAATACTGTTCTTCTGGTATTGCACCACCTACCTTCTCCTTGAGAAAAACAAGCCTAAATACCAGCAACTTGAGCCAATCCCACTTGACCACAACAAATCACACTTCAAACTGGAGGAGTTAAATTCTGAACAAGTTGATCAAATCCTTGAATCTCAACCTGTCAGCCAAGATGGATCCAACCAGCCTCATGAATCACCTGAAGTGGATCCTATTGGCCCATTTGTCTTAGAAGGTACTAAGTAA 2190 0.4393 MVAFGGKKMRQMVVGFGGSGLGQVVAAVAVSFLLRLFTSPGPAFPPDDENNNSDYDAPENGIHDAEAPPSGKVTPVTIRWNNINCSLSDKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLSGRLEFNGNPSSRNTYKFAYVRQEDLFFSQLTVRETLSLAVELQLPHISSAEERDEYVDNLLLKLGLVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYSKFNDIVLLTEGSLVYAGPARGEPLAYFSKFGYNCPDHVNPAEFLADLISVDYSSADSVYSSRKRIDGLVESFSQILSTSTTIYATPITVDELSKSRKKISRRTIVQKKGGWWKQFWLLLRRAWMQASRDVPTNKVRARMSIASAIIFGSVFWRMGNSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERSIVDRERAKGSYSLGPYLFSKLLAEIPIGASFPLMXXXXMARLHPTLLRFGKFCGIVTIESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPVIFRWIPSASLIRWAFQGLCINEFNGLQFEHQNSFDIQTGEQALERLSFGKSRIKDTVVAQNRILFFWYCTTYLLLEKNKPKYQQLEPIPLDHNKSHFKLEELNSEQVDQILESQPVSQDGSNQPHESPEVDPIGPFVLEGTK 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211545g00007 729 Pfam ABC-2 type transporter 403 610 IPR013525 GO:0016020|GO:0140359
Stsc211545g00007 729 CDD ABCG_EPDR 75 306 - -
Stsc211545g00007 729 MobiDBLite consensus disorder prediction 43 73 - -
Stsc211545g00007 729 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 64 628 - -
Stsc211545g00007 729 SMART AAA_5 108 301 IPR003593 GO:0016887
Stsc211545g00007 729 Pfam ABC-2 type transporter 281 338 IPR043926 GO:0140359
Stsc211545g00007 729 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 78 324 IPR003439 GO:0005524
Stsc211545g00007 729 Gene3D - 71 311 IPR027417 -
Stsc211545g00007 729 FunFam ABC transporter G family member 7 76 314 - -
Stsc211545g00007 729 MobiDBLite consensus disorder prediction 697 712 - -
Stsc211545g00007 729 MobiDBLite consensus disorder prediction 697 729 - -
Stsc211545g00007 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 308 IPR027417 -
Stsc211545g00007 729 ProSitePatterns ABC transporters family signature. 224 238 IPR017871 GO:0005524|GO:0016887
Stsc211545g00007 729 Pfam ABC transporter 99 251 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211545g00007 Stsc-Chr211545 28810 35129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211545g00007 98 306 Calmodulin-binding Proteins AT2G36910 26.606 9.73e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211545g00007 K05681 - gmx:100788256 1222.99