Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211545g00006 ATGGTGGCTTTTGGCGGGAAAAAGATGCGACAAATGGTTGTTGGCTTTGGTGGAAGTGGCCTCGGCCAGGTCGTTGCCGCCGTCGCCGTCTCCTTCCTCCTCCGCCTCTTCACTTCTCCCGGTCCCGCCTTCCCTCCGGACGATGAAAATAATAACAGCGACTACGATGCGCCGGAGAACGGTATCCACGACGCCGAAGCTCCGCCATCCGGAAAGGTTACGCCGGTTACAATCCGATGGAACAACATTAATTGCTCTCTTTCCGATAAATCGTCCAAGTCTGTGAGGTTTTTGCTGAAAAATGTGAGTGGAGAAGCAAAACCTGGAAGGTTGCTAGCTATAATGGGGCCTTCGGGTTCAGGGAAGACAACTCTGCTTAATGTTCTTGCAGGCCAGTTGGCGGCATCGCCTCGGTTGCATTTGTCAGGCCGTTTGGAGTTCAATGGAAATCCTAGTTCAAGGAACACTTACAAGTTTGCTTATGTGAGGCAGGAGGATCTCTTCTTCTCGCAACTCACTGTCCGGGAAACATTGTCTCTTGCTGTAGAACTCCAGCTTCCCCATATTTCATCTGCAGAAGAGAGAGATGAATACGTGGACAATCTCCTTTTAAAACTAGGCTTGGTCAGTTGTGCTGATACCAATGTTGGTGATGCAAAAGTTCGCGGAATCAGTGGTGGTGAAAAGAAACGCTTATCCTTGGCATGTGAACTACTTGCAAGTCCATCTGTTATATTTGCTGATGAACCTACAACAGGACTCGATGCCTTCCAAGCTGAGAAAGTCATGGAAACTCTCCAAAAACTTGCACAAGATGGTCATACTGTGATTTGCTCTATACATCAGCCAAGAGGTTCAGTGTACAGTAAATTCAATGACATTGTCTTGCTAACAGAGGGTTCACTTGTTTATGCTGGTCCTGCCCGTGGTGAACCATTGGCATACTTCTCAAAATTTGGGTACAACTGCCCTGATCATGTGAATCCTGCTGAATTTTTGGCTGATCTTATATCTGTAGACTACAGTTCTGCTGATAGTGTTTATTCCTCTCGAAAAAGGATTGATGGTCTTGTTGAGTCATTCTCACAAATACTATCTACATCTACTACAATATATGCAACTCCAATTACTGTGGATGAGCTCTCAAAAAGTAGAAAGAAAATCAGTAGAAGGACTATTGTGCAGAAGAAAGGGGGATGGTGGAAGCAATTTTGGCTGCTTCTTAGGCGAGCATGGATGCAGGCTTCGCGAGATGTACCCACAAACAAAGTTAGAGCAAGGATGTCAATAGCATCAGCAATTATCTTTGGTTCAGTTTTCTGGAGAATGGGAAATTCCCAGACTTCAATTCAAGACAGAATGGGATTGCTTCAGGTAGCTGCAATAAATACAGCAATGGCAGCTCTCACAAAGACTGTTGGTGTGTTTCCAAAGGAACGATCCATTGTTGATAGAGAACGTGCAAAAGGCTCCTATTCTTTGGGTCCATATTTGTTCTCAAAATTGTTAGCAGAGATTCCAATTGGAGCCTCATTTCCATTAATGTNNNNNNNNNNGATGGCTCGTCTCCATCCTACTTTGCTCAGATTTGGGAAATTCTGTGGAATTGTCACTATAGAATCTTTTGCTGCATCCGCAATGGGTCTCACTGTTGGTGCTATGGTTCCAACAACTGAAGCTGCAATGGCGGTAGGCCCATCTCTTATGACAGTTTTTATTGTATTTGGAGGCTACTATGTCAATCCTGAGAATACCCCCGTCATCTTCCGTTGGATTCCTAGTGCTTCTCTAATTAGATGGGCCTTTCAAGGACTTTGCATCAATGAATTTAATGGTCTTCAATTTGAGCATCAGAATTCTTTTGATATACAAACTGGAGAACAGGCACTAGAACGCCTTTCCTTTGGGAAAAGTAGGATTAAGGATACAGTGGTAGCACAAAATAGAATACTGTTCTTCTGGTATTGCACCACCTACCTTCTCCTTGAGAAAAACAAGCCTAAATACCAGCAACTTGAGCCAATCCCACTTGACCACAACAAATCACACTTCAAACTGGAGGAGTTAAATTCTGAACAAGTTGATCAAATCCTTGAATCTCAACCTGTCAGCCAAGATGGATCCAACCAGCCTCATGAATCACCTGAAGTGGATCCTATTGGCCCATTTGTCTTAGAAGGTTTGTAA 2187 0.4394 MVAFGGKKMRQMVVGFGGSGLGQVVAAVAVSFLLRLFTSPGPAFPPDDENNNSDYDAPENGIHDAEAPPSGKVTPVTIRWNNINCSLSDKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLSGRLEFNGNPSSRNTYKFAYVRQEDLFFSQLTVRETLSLAVELQLPHISSAEERDEYVDNLLLKLGLVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYSKFNDIVLLTEGSLVYAGPARGEPLAYFSKFGYNCPDHVNPAEFLADLISVDYSSADSVYSSRKRIDGLVESFSQILSTSTTIYATPITVDELSKSRKKISRRTIVQKKGGWWKQFWLLLRRAWMQASRDVPTNKVRARMSIASAIIFGSVFWRMGNSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERSIVDRERAKGSYSLGPYLFSKLLAEIPIGASFPLMXXXXMARLHPTLLRFGKFCGIVTIESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPVIFRWIPSASLIRWAFQGLCINEFNGLQFEHQNSFDIQTGEQALERLSFGKSRIKDTVVAQNRILFFWYCTTYLLLEKNKPKYQQLEPIPLDHNKSHFKLEELNSEQVDQILESQPVSQDGSNQPHESPEVDPIGPFVLEGL 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211545g00006 728 Pfam ABC-2 type transporter 403 610 IPR013525 GO:0016020|GO:0140359
Stsc211545g00006 728 CDD ABCG_EPDR 75 306 - -
Stsc211545g00006 728 MobiDBLite consensus disorder prediction 43 73 - -
Stsc211545g00006 728 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 64 628 - -
Stsc211545g00006 728 SMART AAA_5 108 301 IPR003593 GO:0016887
Stsc211545g00006 728 Pfam ABC-2 type transporter 281 338 IPR043926 GO:0140359
Stsc211545g00006 728 MobiDBLite consensus disorder prediction 696 728 - -
Stsc211545g00006 728 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 78 324 IPR003439 GO:0005524
Stsc211545g00006 728 Gene3D - 71 311 IPR027417 -
Stsc211545g00006 728 FunFam ABC transporter G family member 7 76 314 - -
Stsc211545g00006 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 308 IPR027417 -
Stsc211545g00006 728 ProSitePatterns ABC transporters family signature. 224 238 IPR017871 GO:0005524|GO:0016887
Stsc211545g00006 728 Pfam ABC transporter 99 251 IPR003439 GO:0005524
Stsc211545g00006 728 MobiDBLite consensus disorder prediction 696 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211545g00006 Stsc-Chr211545 28810 35129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211545g00006 98 306 Calmodulin-binding Proteins AT2G36910 26.606 8.47e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211545g00006 K05681 - gmx:100788256 1219.14