Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211543g00019 ATGTTATTCACATTGCTCTTGCTTCACTGGCTGCAGGATGAAATTTCAAGCCCAATTAGTGCTAGAATTTTTGAGCTATGTGACTCTGATTTGTTCCCAGAAGCACTTCAGAACTCTGAGGTTACTTCAAGCTCCAATTGTTGCTATGAAGAGAATTCCTCATATGCAACAAACATGTCTCTAGCATTAGAAGTAGAAAACAAGTTCAATAACAATAACAATAACAACAATAGCAACAGCAATAATAGCAATAACAGTGTCAACACCCCAAGTAGCACCACCACCACCAACAACAACACAACCAACAGTAGTAACCTCTCAATCATCTTTGACTCTCAAGAAGAGCTTGACAATGACATCTCTGCCTCCATAGATTTCTCATCTTCACCTGCAGCTTTCAATGTTCCACCATTGTTCCCAGTCACAACAAACCAGCATCAAGAACAGTTTGATTTTGCTTCTATGCATCATCATCACCACCAACATCAGATGCAGCAGCTAGCAGCATGTTCAGTTGTGGAGGGCTTCTCACAGTATCCCACTGACACTAGTATTGTTGCACCACCTCCTCTAATGGGGGCTCCTCAATTGCCTTCTGTTTTTGAAGAGGATTGCATTTCTTCTGCTGTCCCTTCTTATGTCACTCTCAACCCTTCTTCTCCTTCTTGCTCTTATCTCAACCCTGCTGGAATTCCACCACCTTACATGCCTCCTGGTGGTCCTCTGGCCACCGCCTTGTCAGCCGACCGTGCCGCTTTGTTCACCGGCAGCATGCTTCTTGGCTCTGAGCTTCAGAGACCAGACCTGGAATACCAAGGAGAAAATGGTGGAATTTATTGTACAGATTCAATTCAGAGAGTGTTTAACCCTCAAGAGCTTCAGGCACTTAGTACTGAGAGTCAGCAACTAGTAGCTGGAGGTGGGGGTTCTGCCAACTTGGCACCAGAAATCTCAAACTTGGAGGACTCTAGCTTCAAGGTTGGGAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATTCACAGATACATGAAGAAAAGAAATGAAAGAAACTTTAGCAAGAAAATTAAGTATGCCTGCCGCAAAACTTTGGCGGATAGCCGGCCTCGTGTTCGAGGAAGGTTTGCAAAGAATGATGGCTTTGGAGATACTCATAGACCTGCTAGTAGCAATCATGAAGAAGAAGATGAAGAAGAAGTAGTTGTGAAAGAAGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGAGTGAACTCCTTCAAATGCAACTATTCCATTCAGTCCTGGATTTGA 1302 0.4324 MLFTLLLLHWLQDEISSPISARIFELCDSDLFPEALQNSEVTSSSNCCYEENSSYATNMSLALEVENKFNNNNNNNNSNSNNSNNSVNTPSSTTTTNNNTTNSSNLSIIFDSQEELDNDISASIDFSSSPAAFNVPPLFPVTTNQHQEQFDFASMHHHHHQHQMQQLAACSVVEGFSQYPTDTSIVAPPPLMGAPQLPSVFEEDCISSAVPSYVTLNPSSPSCSYLNPAGIPPPYMPPGGPLATALSADRAALFTGSMLLGSELQRPDLEYQGENGGIYCTDSIQRVFNPQELQALSTESQQLVAGGGGSANLAPEISNLEDSSFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDGFGDTHRPASSNHEEEDEEEVVVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211543g00019 433 MobiDBLite consensus disorder prediction 372 392 - -
Stsc211543g00019 433 Pfam CCT motif 335 377 IPR010402 GO:0005515
Stsc211543g00019 433 MobiDBLite consensus disorder prediction 69 103 - -
Stsc211543g00019 433 MobiDBLite consensus disorder prediction 372 401 - -
Stsc211543g00019 433 ProSiteProfiles CCT domain profile. 335 377 IPR010402 GO:0005515
Stsc211543g00019 433 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 42 396 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211543g00019 Stsc-Chr211543 115724 118116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211543g00019 335 393 C2C2-CO-like Transcription Factor Family AT5G57660 45.312 2.55e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc211543g00019 CCT 5.8e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211543g00019 - - aprc:113871720 548.895