Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211543g00011 ATGGATTCAGATCAGGGGAAGCTCTTCATCGGAGGCATTTCTTGGGACACCGACGAGGACAAGTTGCGGGACCATTTCTCCAACTATGGTGACGTCACCAACGCCTCCGTCATGAGGGACAAGAACACCGGCAAGCCCCGAGGATTCGGCTTCGTCGAATTTGCCGATCCCTCTGTTCTCGATAGGGTCCTCCAAGACAAGCACGTCATCGATGGCAGAACGGTTGATGCTAAGAGGGCCTTATCAAGAGAGGATCAACAAATTTCTGTCACTTCCAGAGGTGGAAATTCCAATTCTGGTTGGAATTCTGGTGGAAATGGTGGAAACATGAGGACCAAAAAGATATTTGTTGGAGGGTTGCCTCCCACACTGACTGAAGAAAAATTTCGTCAATACTTTGAATCATATGGTCATGTAACTGATGTAGTAGTTATGTTCGACCAGAATACTGGACGACCACGTGGATTTGGTTTTATTTCATTTGACAATGAGGAGGCTGTTGATAGGGTTTTGCACAAGACATTTCATGATTTATATGGTAAACAAGTAGAGGTGAAGCGGGCACTTCCTAAGGATGCCAATCCTGGTGCAAGTGGCCGCAGTGGTGGTGGTGGCGGCGGCGGCGCAGGAGGGTATCAAGGGTATGGATCATCTGGTGGCAACCAGAATGCTTATGATGGTCGTATGGATTCTAGTAGGTATATTCAGCCTCAAAGTGCTGCTGGTGGATTTCCACCTTATGGTTCTGCTGGCTATAGTGCACCTGCGTATGGTTATGGTCCAGCCAATAATGGGATGGGCTATGGTGCATATGGAAGTTATGGTGGTGTTGCTGCTGGGTATGGTGGAGCTGGTGGTGCAGCTTATGGGAATCCAAATGTTGCTAATGCTGCTTATGCTGGTGGGGCAACAGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTGCTTCTGGTTATGGGTCTATGGGCTATGGGAACACTGCTGCATGGGGCGCTCATAGTGCTGTTGCTGGATCTGGTGGCGGCGGCCCTGGTTCAGCAACTGCAGGTCAATCTCCCAGTGGAGCTGCTGGATATGGGAATCAGGCATATGGATATGGTGGGTATGGTGGGTATGGTGGAAGTGATAGTTCTTATGGGAATCCCAGCGGATATGGTGCGGTTGGAGGGCGTACTGGGGGTACCCCTAATAGTAATGCCAGTGGTGCTGGTGGGAATGAACTACAAGGTAGTGGTGGCAGTGGGAGCTATATGGGAAGTGGTTATGGAGATGCAAATGGTAATTCAGGTTATGGAAATGCTGGTTGGAGATCTGAACAAGCTCAAGGATCTGGAAACTATGGGACTCCTCAGGGAAATGGCTCTCATGGTGGGCAAGTTAGTTATGGTGGTGGGTATGCCAGTGCTCAGTCACGACAAGCTCAACAACAGTAA 1434 0.4979 MDSDQGKLFIGGISWDTDEDKLRDHFSNYGDVTNASVMRDKNTGKPRGFGFVEFADPSVLDRVLQDKHVIDGRTVDAKRALSREDQQISVTSRGGNSNSGWNSGGNGGNMRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMFDQNTGRPRGFGFISFDNEEAVDRVLHKTFHDLYGKQVEVKRALPKDANPGASGRSGGGGGGGAGGYQGYGSSGGNQNAYDGRMDSSRYIQPQSAAGGFPPYGSAGYSAPAYGYGPANNGMGYGAYGSYGGVAAGYGGAGGAAYGNPNVANAAYAGGATGGPRSSWPAQAASGYGSMGYGNTAAWGAHSAVAGSGGGGPGSATAGQSPSGAAGYGNQAYGYGGYGGYGGSDSSYGNPSGYGAVGGRTGGTPNSNASGAGGNELQGSGGSGSYMGSGYGDANGNSGYGNAGWRSEQAQGSGNYGTPQGNGSHGGQVSYGGGYASAQSRQAQQQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211543g00011 477 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 477 - -
Stsc211543g00011 477 MobiDBLite consensus disorder prediction 390 477 - -
Stsc211543g00011 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Stsc211543g00011 477 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Stsc211543g00011 477 MobiDBLite consensus disorder prediction 189 229 - -
Stsc211543g00011 477 Gene3D - 109 228 IPR012677 -
Stsc211543g00011 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Stsc211543g00011 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Stsc211543g00011 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 172 IPR000504 GO:0003723
Stsc211543g00011 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Stsc211543g00011 477 MobiDBLite consensus disorder prediction 392 477 - -
Stsc211543g00011 477 FunFam heterogeneous nuclear ribonucleoprotein 1 108 228 - -
Stsc211543g00011 477 MobiDBLite consensus disorder prediction 84 108 - -
Stsc211543g00011 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Stsc211543g00011 477 CDD RRM2_Hrp1p 114 191 - -
Stsc211543g00011 477 SUPERFAMILY RNA-binding domain, RBD 112 220 IPR035979 GO:0003676
Stsc211543g00011 477 Gene3D - 4 88 IPR012677 -
Stsc211543g00011 477 MobiDBLite consensus disorder prediction 215 229 - -
Stsc211543g00011 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
Stsc211543g00011 477 SMART rrm1_1 114 186 IPR000504 GO:0003723
Stsc211543g00011 477 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211543g00011 Stsc-Chr211543 80986 84370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211543g00011 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 22.660 1.76e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211543g00011 K14411 - gmx:100786882 573.933