Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc211543g00011 | ATGGATTCAGATCAGGGGAAGCTCTTCATCGGAGGCATTTCTTGGGACACCGACGAGGACAAGTTGCGGGACCATTTCTCCAACTATGGTGACGTCACCAACGCCTCCGTCATGAGGGACAAGAACACCGGCAAGCCCCGAGGATTCGGCTTCGTCGAATTTGCCGATCCCTCTGTTCTCGATAGGGTCCTCCAAGACAAGCACGTCATCGATGGCAGAACGGTTGATGCTAAGAGGGCCTTATCAAGAGAGGATCAACAAATTTCTGTCACTTCCAGAGGTGGAAATTCCAATTCTGGTTGGAATTCTGGTGGAAATGGTGGAAACATGAGGACCAAAAAGATATTTGTTGGAGGGTTGCCTCCCACACTGACTGAAGAAAAATTTCGTCAATACTTTGAATCATATGGTCATGTAACTGATGTAGTAGTTATGTTCGACCAGAATACTGGACGACCACGTGGATTTGGTTTTATTTCATTTGACAATGAGGAGGCTGTTGATAGGGTTTTGCACAAGACATTTCATGATTTATATGGTAAACAAGTAGAGGTGAAGCGGGCACTTCCTAAGGATGCCAATCCTGGTGCAAGTGGCCGCAGTGGTGGTGGTGGCGGCGGCGGCGCAGGAGGGTATCAAGGGTATGGATCATCTGGTGGCAACCAGAATGCTTATGATGGTCGTATGGATTCTAGTAGGTATATTCAGCCTCAAAGTGCTGCTGGTGGATTTCCACCTTATGGTTCTGCTGGCTATAGTGCACCTGCGTATGGTTATGGTCCAGCCAATAATGGGATGGGCTATGGTGCATATGGAAGTTATGGTGGTGTTGCTGCTGGGTATGGTGGAGCTGGTGGTGCAGCTTATGGGAATCCAAATGTTGCTAATGCTGCTTATGCTGGTGGGGCAACAGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTGCTTCTGGTTATGGGTCTATGGGCTATGGGAACACTGCTGCATGGGGCGCTCATAGTGCTGTTGCTGGATCTGGTGGCGGCGGCCCTGGTTCAGCAACTGCAGGTCAATCTCCCAGTGGAGCTGCTGGATATGGGAATCAGGCATATGGATATGGTGGGTATGGTGGGTATGGTGGAAGTGATAGTTCTTATGGGAATCCCAGCGGATATGGTGCGGTTGGAGGGCGTACTGGGGGTACCCCTAATAGTAATGCCAGTGGTGCTGGTGGGAATGAACTACAAGGTAGTGGTGGCAGTGGGAGCTATATGGGAAGTGGTTATGGAGATGCAAATGGTAATTCAGGTTATGGAAATGCTGGTTGGAGATCTGAACAAGCTCAAGGATCTGGAAACTATGGGACTCCTCAGGGAAATGGCTCTCATGGTGGGCAAGTTAGTTATGGTGGTGGGTATGCCAGTGCTCAGTCACGACAAGCTCAACAACAGTAA | 1434 | 0.4979 | MDSDQGKLFIGGISWDTDEDKLRDHFSNYGDVTNASVMRDKNTGKPRGFGFVEFADPSVLDRVLQDKHVIDGRTVDAKRALSREDQQISVTSRGGNSNSGWNSGGNGGNMRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMFDQNTGRPRGFGFISFDNEEAVDRVLHKTFHDLYGKQVEVKRALPKDANPGASGRSGGGGGGGAGGYQGYGSSGGNQNAYDGRMDSSRYIQPQSAAGGFPPYGSAGYSAPAYGYGPANNGMGYGAYGSYGGVAAGYGGAGGAAYGNPNVANAAYAGGATGGPRSSWPAQAASGYGSMGYGNTAAWGAHSAVAGSGGGGPGSATAGQSPSGAAGYGNQAYGYGGYGGYGGSDSSYGNPSGYGAVGGRTGGTPNSNASGAGGNELQGSGGSGSYMGSGYGDANGNSGYGNAGWRSEQAQGSGNYGTPQGNGSHGGQVSYGGGYASAQSRQAQQQ | 477 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc211543g00011 | 477 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 | 1 | 477 | - | - | |
Stsc211543g00011 | 477 | MobiDBLite | consensus disorder prediction | 390 | 477 | - | - | |
Stsc211543g00011 | 477 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
Stsc211543g00011 | 477 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 109 | IPR035979 | GO:0003676 | |
Stsc211543g00011 | 477 | MobiDBLite | consensus disorder prediction | 189 | 229 | - | - | |
Stsc211543g00011 | 477 | Gene3D | - | 109 | 228 | IPR012677 | - | |
Stsc211543g00011 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
Stsc211543g00011 | 477 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 5 | 87 | - | - | |
Stsc211543g00011 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 115 | 172 | IPR000504 | GO:0003723 | |
Stsc211543g00011 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 75 | IPR000504 | GO:0003723 | |
Stsc211543g00011 | 477 | MobiDBLite | consensus disorder prediction | 392 | 477 | - | - | |
Stsc211543g00011 | 477 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 108 | 228 | - | - | |
Stsc211543g00011 | 477 | MobiDBLite | consensus disorder prediction | 84 | 108 | - | - | |
Stsc211543g00011 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 113 | 190 | IPR000504 | GO:0003723 | |
Stsc211543g00011 | 477 | CDD | RRM2_Hrp1p | 114 | 191 | - | - | |
Stsc211543g00011 | 477 | SUPERFAMILY | RNA-binding domain, RBD | 112 | 220 | IPR035979 | GO:0003676 | |
Stsc211543g00011 | 477 | Gene3D | - | 4 | 88 | IPR012677 | - | |
Stsc211543g00011 | 477 | MobiDBLite | consensus disorder prediction | 215 | 229 | - | - | |
Stsc211543g00011 | 477 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
Stsc211543g00011 | 477 | SMART | rrm1_1 | 114 | 186 | IPR000504 | GO:0003723 | |
Stsc211543g00011 | 477 | MobiDBLite | consensus disorder prediction | 81 | 108 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc211543g00011 | Stsc-Chr211543 | 80986 | 84370 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc211543g00011 | 8 | 200 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 22.660 | 1.76e-07 | 52.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc211543g00011 | K14411 | - | gmx:100786882 | 573.933 |