Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211541g00009 ATGGAATTAGAGCAAGCCTTGGAGCCTAGGACCGGTGGGTTTCGACCTCAGATAGAAGCTCAGAAGTTCAGCTCAGAAAATCCCTTTTTCATGGTCAAGATAATGCAAGATAACCTATTGATATCAAGGACGTCCATACCAATAGCCTTCTTCACCAAGTATTTTAAAAAGAAAGAGCCAAATGTAAAGATACAGTTTGAAAACAAGTTGTGGCCTGCAAAGTTGCTCTATTATCCATCATTGTCTAACGCCTATATCTCCAGTGGTTGGCAGCATTTTATTCTTGCCAGTAATTTAAAAGCAGGAGATGTTTGTGTATTTGAGCTCATCAATGTAGAAGAACGAGTGCTTGATGTTCATATTTATAGAGCTGATGGTTAG 381 0.3911 MELEQALEPRTGGFRPQIEAQKFSSENPFFMVKIMQDNLLISRTSIPIAFFTKYFKKKEPNVKIQFENKLWPAKLLYYPSLSNAYISSGWQHFILASNLKAGDVCVFELINVEERVLDVHIYRADG 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211541g00009 126 ProSiteProfiles B3 DNA-binding domain profile. 29 125 IPR003340 GO:0003677
Stsc211541g00009 126 SUPERFAMILY DNA-binding pseudobarrel domain 23 125 IPR015300 -
Stsc211541g00009 126 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 19 125 IPR044837 -
Stsc211541g00009 126 SMART B3_2 30 125 IPR003340 GO:0003677
Stsc211541g00009 126 Pfam B3 DNA binding domain 29 124 IPR003340 GO:0003677
Stsc211541g00009 126 CDD B3_DNA 28 123 IPR003340 GO:0003677
Stsc211541g00009 126 Gene3D - 15 125 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211541g00009 Stsc-Chr211541 45115 45581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211541g00009 20 125 B3 DNA Binding Superfamily AT3G18990 36.111 1.45e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211541g00009 B3 9.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211541g00009 - - adu:110272500 145.976