Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211541g00006 ATGAGGCTCGATTACGTCAACTACACAGTCTCCGGTGACGGCAGCATCATGAACGAATTGACTCCTCAGAATTTCTCAGTCTGCGAAGCCACTTGCAGAACAAACTCAAACTGTTTGGGCTTCGGATTCAAGTACGATGGATCCGGTTACTGCGTTACGTTAGTCGGTAAAGAGCTTCAGTACGGTCACTGGTCGCCCGGAACGGATACAGCGTTGTTCATCAAAGTAGATGAATCAGAATCTAAAGAACCTTCTAATTTCGTTGGGCTTACTGAGGTTATGCAAACGAGTTGCCCAGTGAGGATAAGCCTCCCTCTGCCACCGAAAGACTCGAACGCCACCACTAGGAACATCATCATAATCTGCACACTATTTGCAGCAGAGCTTATTTCTGGTGTGGCTTTCTTCTGGTCTTTTCTAAAGAGATACATCAAATACAGGGACATGGCCACTACTTTAGGCCTTGAGCTCTTACCAGCTGGTGGCCCCAAAAGGTTTACTTACTCTGAGCTCAAGGCAGCAACCAATGATTTCTCCAACCTCATAGGAAGAGGCGGATTTGGGGCTGTTTACCGAGGCGAGTTGCCGGACCACCGAGTCGTTGCTGTGAAATGCTTGAGAAATGTTTCCGGCGGCGATGCGGAGTTCTGGGCTGAGGTCACCATCATTGCCAGAATGCACCACCTCAATTTGGTTAGACTATGGGGATTCTGTGCTGAGAAAGGACAAAGAATTCTCGTGTATGAATACATCCCTGGTGGCTCATTGGACAAGTACCTATTTAGGGCGAACAATTCCAAAAAGGGTGACTCAAACACACAGCAGGAGAAGCCTATTTTGGATTGGAGTGTGAGGTATAGAATTGCTCTTGGCGTAGCAAGAGCTATTGCATATTTGCATGAAGAGTGTTTAGAATGGGTTCTACACTGTGACATCAAGCCTGAGAATATTCTATTAGGGGATGATTTTTGTCCTAAGATATCTGATTTTGGACTTGCTAAGTTAAGGAAAAAAGAGGATATGGTAACAATGTCTCGGAGGAGGGGTACTCCGGGTTACATGGCTCCTGAATGGGTAACTGCGGATCCAATAACTTCAAAGGCTGATGTATATANNNNNNNNNNGAACTTTGAGAGTCCTGGGTCTTTGGTAAAGAGTGATGAGTGGTACTTCCCAGGTTGGGCATTTGATAAGATGTTCAAGGAAATGAGGATTGAGGACATTCTTGATGGCCATATTAGGGAAATGTATGATACAAGGGCCCATTTTGACATGGTTAATAGGATGGTGAAGACTGCTATGTGGTGCCTTCAGGATAGGCCTGAGTTGAGGCCTACAATGGGGAAAGTGGCTAAGATGTTGGAAGGAACTGTGGAGATTACTGAGCCCAAGAAACCCACTGTATTCTTCCTTGGGGAAGAATAG 1425 0.4547 MRLDYVNYTVSGDGSIMNELTPQNFSVCEATCRTNSNCLGFGFKYDGSGYCVTLVGKELQYGHWSPGTDTALFIKVDESESKEPSNFVGLTEVMQTSCPVRISLPLPPKDSNATTRNIIIICTLFAAELISGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSELKAATNDFSNLIGRGGFGAVYRGELPDHRVVAVKCLRNVSGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYIPGGSLDKYLFRANNSKKGDSNTQQEKPILDWSVRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWVTADPITSKADVYXXXXNFESPGSLVKSDEWYFPGWAFDKMFKEMRIEDILDGHIREMYDTRAHFDMVNRMVKTAMWCLQDRPELRPTMGKVAKMLEGTVEITEPKKPTVFFLGEE 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211541g00006 474 Gene3D Transferase(Phosphotransferase) domain 1 251 469 - -
Stsc211541g00006 474 ProSitePatterns Protein kinases ATP-binding region signature. 182 204 IPR017441 GO:0005524
Stsc211541g00006 474 PANTHER OS07G0415500 PROTEIN 13 469 - -
Stsc211541g00006 474 Pfam Protein kinase domain 180 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211541g00006 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Stsc211541g00006 474 FunFam S-receptor-like serine/threonine-protein kinase 147 250 - -
Stsc211541g00006 474 SUPERFAMILY Protein kinase-like (PK-like) 158 455 IPR011009 -
Stsc211541g00006 474 ProSiteProfiles Protein kinase domain profile. 176 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211541g00006 474 Gene3D Phosphorylase Kinase; domain 1 149 250 - -
Stsc211541g00006 474 SMART serkin_6 176 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211541g00006 474 FunFam Serine/threonine-protein kinase 251 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211541g00006 Stsc-Chr211541 34558 36548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211541g00006 17 466 Receptor kinase-like Gene Family AT4G18250 32.218 1.85e-69 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc211541g00006 Pkinase 6.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211541g00006 - - ahf:112783437 915.605